Jiayu Shang
Overview
Explore the profile of Jiayu Shang including associated specialties, affiliations and a list of published articles.
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24
Citations
267
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Recent Articles
1.
Guan J, Ji Y, Peng C, Zou W, Tang X, Shang J, et al.
Brief Bioinform
. 2025 Jan;
26(1.
PMID: 39838963
Bacteriophages are viruses that target bacteria, playing a crucial role in microbial ecology. Phage proteins are important in understanding phage biology, such as virus infection, replication, and evolution. Although a...
2.
Ji Y, Shang J, Guan J, Zou W, Liao H, Tang X, et al.
Gigascience
. 2024 Dec;
13.
PMID: 39704702
Background: Plasmid, as a mobile genetic element, plays a pivotal role in facilitating the transfer of traits, such as antimicrobial resistance, among the bacterial community. Annotating plasmid-encoded proteins with the...
3.
Peng C, Shang J, Guan J, Wang D, Sun Y
Bioinformatics
. 2024 Nov;
40(12).
PMID: 39579086
Motivation: Viruses, with their ubiquitous presence and high diversity, play pivotal roles in ecological systems and public health. Accurate identification of viruses in various ecosystems is essential for comprehending their...
4.
Zhang J, Shang J, Liu B, Zhu D, Li Q, Yin L, et al.
J Hazard Mater
. 2024 Oct;
480:136165.
PMID: 39418908
The presence of pathogenic bacteria and antibiotic resistance genes (ARGs) in urban air poses a significant threat to public health. While prevailing research predominantly focuses on the airborne transmission of...
5.
Shang J, Peng C, Ji Y, Guan J, Cai D, Tang X, et al.
Bioinformatics
. 2024 Sep;
40(9).
PMID: 39316715
Motivation: Protein embedding, which represents proteins as numerical vectors, is a crucial step in various learning-based protein annotation/classification problems, including gene ontology prediction, protein-protein interaction prediction, and protein structure prediction....
6.
Tang X, Shang J, Chen G, Katie Chan K, Shi M, Sun Y
Mol Biol Evol
. 2024 Aug;
41(8).
PMID: 39137184
Segmented RNA viruses are a complex group of RNA viruses with multisegment genomes. Reconstructing complete segmented viruses is crucial for advancing our understanding of viral diversity, evolution, and public health...
7.
Liao H, Shang J, Sun Y
Bioinformatics
. 2023 Dec;
39(12).
PMID: 38085234
Motivation: With advances in metagenomic sequencing technologies, there are accumulating studies revealing the associations between the human gut microbiome and some human diseases. These associations shed light on using gut...
8.
Wang D, Shang J, Lin H, Liang J, Wang C, Sun Y, et al.
Water Res
. 2023 Nov;
248:120859.
PMID: 37976954
As important mobile genetic elements, phages support the spread of antibiotic resistance genes (ARGs). Previous analyses of metaviromes or metagenome-assembled genomes (MAGs) failed to assess the extent of ARGs transferred...
9.
Guan J, Peng C, Shang J, Tang X, Sun Y
Brief Bioinform
. 2023 Nov;
24(6).
PMID: 37965809
Motivation: Bacteriophages (phages for short), which prey on and replicate within bacterial cells, have a significant role in modulating microbial communities and hold potential applications in treating antibiotic resistance. The...
10.
Shang J, Peng C, Liao H, Tang X, Sun Y
Bioinform Adv
. 2023 Aug;
3(1):vbad101.
PMID: 37641717
Motivation: There is accumulating evidence showing the important roles of bacteriophages (phages) in regulating the structure and functions of the microbiome. However, lacking an easy-to-use and integrated phage analysis software...