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J W Ponder

Explore the profile of J W Ponder including associated specialties, affiliations and a list of published articles. Areas
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Articles 15
Citations 635
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Recent Articles
1.
Frieden C, Huang E, Ponder J
Methods Mol Biol . 2001 May; 168:133-58. PMID: 11357623
No abstract available.
2.
Lu J, Lin C, Tang C, Ponder J, Kao J, Cistola D, et al.
J Mol Biol . 2000 Jul; 300(3):619-32. PMID: 10884357
The structure and backbone dynamics of rat holo cellular retinol-binding protein II (holo-CRBP II) in solution has been determined by multidimensional NMR. The final structure ensemble was based on 3980...
3.
Huang E, Samudrala R, Ponder J
J Mol Biol . 1999 Jul; 290(1):267-81. PMID: 10388572
The problem of protein tertiary structure prediction from primary sequence can be separated into two subproblems: generation of a library of possible folds and specification of a best fold given...
4.
Lu J, Lin C, Tang C, Ponder J, Kao J, Cistola D, et al.
J Mol Biol . 1999 Feb; 286(4):1179-95. PMID: 10047490
The structure and dynamics of rat apo-cellular retinol binding protein II (apo-CRBP II) in solution has been determined by multidimensional NMR analysis of uniformly enriched recombinant rat 13C, 15N-apo-CRBP II...
5.
Pappu R, Marshall G, Ponder J
Nat Struct Biol . 1999 Jan; 6(1):50-5. PMID: 9886292
Potential smoothing, a deterministic analog of stochastic simulated annealing, is a powerful paradigm for the solution of conformational search problems that require extensive sampling, and should be a useful tool...
6.
Huang E, Koehl P, Levitt M, Pappu R, Ponder J
Proteins . 1998 Oct; 33(2):204-17. PMID: 9779788
The ab initio folding problem can be divided into two sequential tasks of approximately equal computational complexity: the generation of native-like backbone folds and the positioning of side chains upon...
7.
Huang E, Samudrala R, Ponder J
Protein Sci . 1998 Oct; 7(9):1998-2003. PMID: 9761481
For successful ab initio protein structure prediction, a method is needed to identify native-like structures from a set containing both native and non-native protein-like conformations. In this regard, the use...
8.
Kisselev O, Kao J, Ponder J, Fann Y, Gautam N, Marshall G
Proc Natl Acad Sci U S A . 1998 May; 95(8):4270-5. PMID: 9539726
A large superfamily of transmembrane receptors control cellular responses to diverse extracellular signals by catalyzing activation of specific types of heterotrimeric GTP-binding proteins. How these receptors recognize and promote nucleotide...
9.
Hillery C, Mancuso D, Sadler J, Ponder J, Jozwiak M, Christopherson P, et al.
Blood . 1998 Mar; 91(5):1572-81. PMID: 9473222
von Willebrand disease (vWD) is a common, autosomally inherited, bleeding disorder caused by quantitative and/or qualitative deficiency of von Willebrand factor (vWF). We describe two families with a variant form...
10.
Hodsdon M, Ponder J, Cistola D
J Mol Biol . 1996 Dec; 264(3):585-602. PMID: 8969307
The three-dimensional solution structure of rat intestinal fatty acid-binding protein (I-FABP) complexed with palmitate has been determined using multidimensional triple-resonance NMR methods. The structure is based on 3889 conformational restraints...