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Hamid Mirebrahim

Explore the profile of Hamid Mirebrahim including associated specialties, affiliations and a list of published articles. Areas
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Articles 6
Citations 144
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Recent Articles
1.
Braun J, Hill E, Contreras E, Yasuda M, Morgan A, Ditelberg S, et al.
bioRxiv . 2025 Jan; PMID: 39829775
Antibodies and helper T cells play important roles in SARS-CoV-2 infection and vaccination. We sequenced B- and T-cell receptor repertoires (BCR/TCR) from the blood of 251 infectees, vaccinees, and controls...
2.
Schneider-Hohendorf T, Wunsch C, Falk S, Raposo C, Rubelt F, Mirebrahim H, et al.
Brain . 2024 Jul; 148(3):933-940. PMID: 39021292
Epstein-Barr virus (EBV) infection has long been associated with the development of multiple sclerosis (MS). Patients with MS have elevated titres of EBV-specific antibodies in serum and show signs of...
3.
Alhakami H, Mirebrahim H, Lonardi S
Genome Biol . 2017 May; 18(1):93. PMID: 28521789
Background: The majority of eukaryotic genomes are unfinished due to the algorithmic challenges of assembling them. A variety of assembly and scaffolding tools are available, but it is not always...
4.
Munoz-Amatriain M, Mirebrahim H, Xu P, Wanamaker S, Luo M, Alhakami H, et al.
Plant J . 2016 Oct; 89(5):1042-1054. PMID: 27775877
Cowpea (Vigna unguiculata L. Walp.) is a legume crop that is resilient to hot and drought-prone climates, and a primary source of protein in sub-Saharan Africa and other parts of...
5.
Munoz-Amatriain M, Lonardi S, Luo M, Madishetty K, Svensson J, Moscou M, et al.
Plant J . 2015 Aug; 84(1):216-27. PMID: 26252423
Barley (Hordeum vulgare L.) possesses a large and highly repetitive genome of 5.1 Gb that has hindered the development of a complete sequence. In 2012, the International Barley Sequencing Consortium...
6.
Mirebrahim H, Close T, Lonardi S
Bioinformatics . 2015 Jun; 31(12):i9-16. PMID: 26072514
Unlabelled: We introduce a new divide and conquer approach to deal with the problem of de novo genome assembly in the presence of ultra-deep sequencing data (i.e. coverage of 1000x...
7.
Lonardi S, Mirebrahim H, Wanamaker S, Alpert M, Ciardo G, Duma D, et al.
Bioinformatics . 2015 May; 31(18):2972-80. PMID: 25995232
Motivation: As the invention of DNA sequencing in the 70s, computational biologists have had to deal with the problem of de novo genome assembly with limited (or insufficient) depth of...