H M Berman
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Explore the profile of H M Berman including associated specialties, affiliations and a list of published articles.
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98
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15923
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Recent Articles
21.
Woda J, Schneider B, Patel K, Mistry K, Berman H
Biophys J
. 1998 Oct;
75(5):2170-7.
PMID: 9788911
Eleven protein-DNA crystal structures were analyzed to test the hypothesis that hydration sites predicted in the first hydration shell of DNA mark the positions where protein residues hydrogen-bond to DNA....
22.
Loewenstern D, Berman H, HIRSH H
Pac Symp Biocomput
. 1998 Aug;
:669-80.
PMID: 9697221
We introduce an algorithm, LLLAMA, which combines simple pattern recognizers into a general method for estimating the entropy of a sequence. Each pattern recognizer exploits a partial match between subsequences...
23.
Kramer R, Vitagliano L, Bella J, Berisio R, Mazzarella L, Brodsky B, et al.
J Mol Biol
. 1998 Jul;
280(4):623-38.
PMID: 9677293
The crystal structure of the triple-helical peptide (Pro-Pro-Gly)10 has been re-determined to obtain a more accurate description for this widely studied collagen model and to provide a comparison with the...
24.
Liu J, Lynch P, Chien C, Montelione G, KRUG R, Berman H
Nat Struct Biol
. 1997 Nov;
4(11):896-9.
PMID: 9360602
The nonstructural protein (NS1 protein) of the influenza A virus binds to several types of RNAs. X-ray crystallographic analysis of the RNA-binding domain reveals a unique topology for the monomer...
25.
Bourne P, Berman H, McMahon B, Watenpaugh K, Westbrook J, Fitzgerald P
Methods Enzymol
. 1997 Jan;
277:571-90.
PMID: 18488325
No abstract available.
26.
Berman H
Biopolymers
. 1997 Jan;
44(1):23-44.
PMID: 9097732
The history of DNA crystallography is reviewed and is followed by discussion of the methods used for structure determination. The features of B-DNA molecular and crystal structures are described.
27.
Bella J, Berman H
J Mol Biol
. 1996 Dec;
264(4):734-42.
PMID: 8980682
The crystal structure of the collagen triple-helical peptide (Pro-Hyp-Gly)4-Pro-Hyp-Ala-(Pro-Hyp-Gly)5 shows evidence for the existence of interchain contacts between alpha-carbon hydrogens from Gly and Hyp residues, and carbonyl groups from Gly...
28.
Parkinson G, Wilson C, Gunasekera A, Ebright Y, Ebright R, Ebright R, et al.
J Mol Biol
. 1996 Jul;
260(3):395-408.
PMID: 8757802
The crystallographic structure of the CAP-DNA complex at 3.0 A resolution has been reported previously. For technical reasons, the reported structure had been determined using a gapped DNA molecule lacking...
29.
Harlocker S, Inouye M, Berman H, Stock A
Protein Sci
. 1996 Jul;
5(7):1429-33.
PMID: 8819176
A C-terminal fragment of the transcription factor OmpR has been crystallized using the sitting drop vapor-diffusion method. Crystals belong to the trigonal space-group P3n12 with cell dimensions a = b...
30.
Parkinson G, Vojtechovsky J, Clowney L, Brunger A, Berman H
Acta Crystallogr D Biol Crystallogr
. 1996 Jan;
52(Pt 1):57-64.
PMID: 15299726
Structures at atomic resolution (up to 1.0 A) which contain bases, sugars or the phosphodiester linkage, were selected from the Nucleic Acid Database or the Cambridge Structural Database to build...