Georgios A Pavlopoulos
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Explore the profile of Georgios A Pavlopoulos including associated specialties, affiliations and a list of published articles.
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79
Citations
2673
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Recent Articles
1.
Gavriilidis G, Vasileiou V, Dimitsaki S, Karakatsoulis G, Giannakakis A, Pavlopoulos G, et al.
Bioinformatics
. 2025 Feb;
41(3).
PMID: 39921901
Motivation: Computational analyses of bulk and single-cell omics provide translational insights into complex diseases, such as COVID-19, by revealing molecules, cellular phenotypes, and signalling patterns that contribute to unfavourable clinical...
2.
Mouratidis I, Konnaris M, Konnaris M, Chantzi N, Chan C, Patsakis M, et al.
Genome Res
. 2025 Jan;
35(2):279-295.
PMID: 39746719
Despite the exponential increase in sequencing information driven by massively parallel DNA sequencing technologies, universal and succinct genomic fingerprints for each organism are still missing. Identifying the shortest species-specific nucleotide...
3.
Provatas K, Chantzi N, Patsakis M, Nayak A, Mouratidis I, Pavlopoulos G, et al.
bioRxiv
. 2024 Nov;
PMID: 39605716
Inverted repeats are repetitive elements that can form hairpin and cruciform structures. They are linked to genomic instability, however they also have various biological functions. Their distribution differs markedly across...
4.
Patsakis M, Provatas K, Baltoumas F, Chantzi N, Mouratidis I, Pavlopoulos G, et al.
ArXiv
. 2024 Nov;
PMID: 39483349
Motivation: Genome and Proteome Alignments, represented by the Multiple Alignment File (MAF) format, have become a standard approach in the field of comparative genomics and proteomics. However, current approaches lack...
5.
Kosicki M, Baltoumas F, Kelman G, Boverhof J, Ong Y, Cook L, et al.
Nucleic Acids Res
. 2024 Oct;
53(D1):D324-D330.
PMID: 39470740
Regulatory elements (enhancers) are major drivers of gene expression in mammals and harbor many genetic variants associated with human diseases. Here, we present an updated VISTA Enhancer Browser (https://enhancer.lbl.gov), a...
6.
Theodosiou T, Vrettos K, Baltsavia I, Baltoumas F, Papanikolaou N, Antonakis A, et al.
Comput Struct Biotechnol J
. 2024 Sep;
23:3247-3253.
PMID: 39279874
The process of navigating through the landscape of biomedical literature and performing searches or combining them with bioinformatics analyses can be daunting, considering the exponential growth of scientific corpora and...
7.
Moeckel C, Mareboina M, Konnaris M, Chan C, Mouratidis I, Montgomery A, et al.
Comput Struct Biotechnol J
. 2024 Jun;
23:2289-2303.
PMID: 38840832
The rapid progression of genomics and proteomics has been driven by the advent of advanced sequencing technologies, large, diverse, and readily available omics datasets, and the evolution of computational data...
8.
Aplakidou E, Vergoulidis N, Chasapi M, Venetsianou N, Kokoli M, Panagiotopoulou E, et al.
Comput Struct Biotechnol J
. 2024 May;
23:2011-2033.
PMID: 38765606
The fields of Metagenomics and Metatranscriptomics involve the examination of complete nucleotide sequences, gene identification, and analysis of potential biological functions within diverse organisms or environmental samples. Despite the vast...
9.
Mouratidis I, Baltoumas F, Chantzi N, Patsakis M, Chan C, Montgomery A, et al.
Comput Struct Biotechnol J
. 2024 May;
23:1919-1928.
PMID: 38711760
The decrease in sequencing expenses has facilitated the creation of reference genomes and proteomes for an expanding array of organisms. Nevertheless, no established repository that details organism-specific genomic and proteomic...
10.
Zhao J, Baltoumas F, Konnaris M, Mouratidis I, Liu Z, Sims J, et al.
bioRxiv
. 2023 Dec;
PMID: 38045264
Massively parallel reporter assays (MPRAs) represent a set of high-throughput technologies that measure the functional effects of thousands of sequences/variants on gene regulatory activity. There are several different variations of...