Dylan Chivian
Overview
Explore the profile of Dylan Chivian including associated specialties, affiliations and a list of published articles.
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Snapshot
Articles
33
Citations
3375
Followers
0
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Recent Articles
1.
Chivian D, Jungbluth S, Dehal P, Wood-Charlson E, Canon R, Allen B, et al.
Nat Protoc
. 2022 Nov;
18(2):658.
PMID: 36451056
No abstract available.
2.
Chivian D, Jungbluth S, Dehal P, Wood-Charlson E, Canon R, Allen B, et al.
Nat Protoc
. 2022 Nov;
18(1):208-238.
PMID: 36376589
Uncultivated Bacteria and Archaea account for the vast majority of species on Earth, but obtaining their genomes directly from the environment, using shotgun sequencing, has only become possible recently. To...
3.
Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N, Schulz F, et al.
Nat Biotechnol
. 2021 Apr;
39(4):521.
PMID: 33795890
No abstract available.
4.
Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N, Schulz F, et al.
Nat Biotechnol
. 2020 Nov;
39(4):520.
PMID: 33208936
No abstract available.
5.
Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N, Schulz F, et al.
Nat Biotechnol
. 2020 Nov;
39(4):499-509.
PMID: 33169036
The reconstruction of bacterial and archaeal genomes from shotgun metagenomes has enabled insights into the ecology and evolution of environmental and host-associated microbiomes. Here we applied this approach to >10,000...
6.
Arkin A, Cottingham R, Henry C, Harris N, Stevens R, Maslov S, et al.
Nat Biotechnol
. 2018 Jul;
36(7):566-569.
PMID: 29979655
No abstract available.
7.
Labonte J, Field E, Lau M, Chivian D, van Heerden E, Wommack K, et al.
Front Microbiol
. 2015 May;
6:349.
PMID: 25954269
A major fraction of Earth's prokaryotic biomass dwells in the deep subsurface, where cellular abundances per volume of sample are lower, metabolism is slower, and generation times are longer than...
8.
Ramsay B, Hwang C, Woo H, Carroll S, Lucas S, Han J, et al.
Genome Announc
. 2015 Mar;
3(2).
PMID: 25767232
Desulfovibrio carbinoliphilus subsp. oakridgensis FW-101-2B is an anaerobic, organic acid/alcohol-oxidizing, sulfate-reducing δ-proteobacterium. FW-101-2B was isolated from contaminated groundwater at The Field Research Center at Oak Ridge National Lab after in...
9.
DeAngelis K, Dhaeseleer P, Chivian D, Simmons B, Arkin A, Mavromatis K, et al.
Stand Genomic Sci
. 2013 Sep;
7(3):382-98.
PMID: 24019987
Tropical forest soils decompose litter rapidly with frequent episodes of anoxia, making it likely that bacteria using alternate terminal electron acceptors (TEAs) such as iron play a large role in...
10.
Chivian D, Dehal P, Keller K, Arkin A
Nucleic Acids Res
. 2012 Dec;
41(Database issue):D648-54.
PMID: 23203984
The metaMicrobesOnline database (freely available at http://meta.MicrobesOnline.org) offers phylogenetic analysis of genes from microbial genomes and metagenomes. Gene trees are constructed for canonical gene families such as COG and Pfam....