Derek A Debe
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Explore the profile of Derek A Debe including associated specialties, affiliations and a list of published articles.
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8
Citations
84
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Recent Articles
1.
Debe D, Mamidipaka R, Gregg R, Metz J, Gupta R, Muchmore S
J Comput Aided Mol Des
. 2013 Oct;
27(9):771-82.
PMID: 24113765
Automated lead optimization helper application (ALOHA) is a novel fitness scoring approach for small molecule lead optimization. ALOHA employs a series of generalized Bayesian models trained from public and proprietary...
2.
Poleksic A, Fienup M, Danzer J, Debe D
J Bioinform Comput Biol
. 2008 May;
6(2):335-45.
PMID: 18464326
Measuring the accuracy of protein three-dimensional structures is one of the most important problems in protein structure prediction. For structure-based drug design, the accuracy of the binding site is far...
3.
Muchmore S, Debe D, Metz J, Brown S, Martin Y, Hajduk P
J Chem Inf Model
. 2008 Apr;
48(5):941-8.
PMID: 18416545
A wide variety of computational algorithms have been developed that strive to capture the chemical similarity between two compounds for use in virtual screening and lead discovery. One limitation of...
4.
Hambly K, Danzer J, Muskal S, Debe D
Mol Divers
. 2006 Oct;
10(3):273-81.
PMID: 17031532
Structural genomics projects are producing protein structure data at an unprecedented rate. In this paper, we present the Target Informatics Platform (TIP), a novel structural informatics approach for amplifying the...
5.
Poleksic A, Danzer J, Palmer B, Olafson B, Debe D
Proteins
. 2006 Sep;
65(4):953-8.
PMID: 17006949
We present a novel, knowledge-based method for the side-chain addition step in protein structure modeling. The foundation of the method is a conditional probability equation, which specifies the probability that...
6.
Palmer B, Danzer J, Hambly K, Debe D
J Chem Inf Model
. 2006 Jul;
46(4):1871-6.
PMID: 16859318
Advances in protein crystallography and homology modeling techniques are producing vast amounts of high resolution protein structure data at ever increasing rates. As such, the ability to quickly and easily...
7.
Debe D, Danzer J, Goddard W, Poleksic A
Proteins
. 2006 Jun;
64(4):960-7.
PMID: 16786595
STRUCTFAST is a novel profile-profile alignment algorithm capable of detecting weak similarities between protein sequences. The increased sensitivity and accuracy of the STRUCTFAST method are achieved through several unique features....
8.
Poleksic A, Danzer J, Hambly K, Debe D
Bioinformatics
. 2005 Apr;
21(12):2827-31.
PMID: 15817690
Motivation: Background distribution statistics for profile-based sequence alignment algorithms cannot be calculated analytically, and hence such algorithms must resort to measuring the significance of an alignment score by assessing its...