David Arndt
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Explore the profile of David Arndt including associated specialties, affiliations and a list of published articles.
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25
Citations
9744
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Recent Articles
1.
Dube B, Riggs A, Kern B, Cady E, Krist J, Zhou H, et al.
J Opt Soc Am A Opt Image Sci Vis
. 2022 Dec;
39(12):C133-C142.
PMID: 36520751
Astronomical instruments to detect exoplanets require extreme wavefront stability. For these missions to succeed, comprehensive and precise modeling is required to design and analyze suitable coronagraphs and their wavefront control...
2.
Wishart D, Guo A, Oler E, Wang F, Anjum A, Peters H, et al.
Nucleic Acids Res
. 2022 Jan;
50(D1):D622-D631.
PMID: 34986597
The Human Metabolome Database or HMDB (https://hmdb.ca) has been providing comprehensive reference information about human metabolites and their associated biological, physiological and chemical properties since 2007. Over the past 15...
3.
Wang F, Liigand J, Tian S, Arndt D, Greiner R, Wishart D
Anal Chem
. 2021 Aug;
93(34):11692-11700.
PMID: 34403256
In the field of metabolomics, mass spectrometry (MS) is the method most commonly used for identifying and annotating metabolites. As this typically involves matching a given MS spectrum against an...
4.
Djoumbou-Feunang Y, Pon A, Karu N, Zheng J, Li C, Arndt D, et al.
Metabolites
. 2019 Apr;
9(4).
PMID: 31013937
Metabolite identification for untargeted metabolomics is often hampered by the lack of experimentally collected reference spectra from tandem mass spectrometry (MS/MS). To circumvent this problem, Competitive Fragmentation Modeling-ID (CFM-ID) was...
5.
Hafsa N, Berjanskii M, Arndt D, Wishart D
J Biomol NMR
. 2017 Dec;
70(1):33-51.
PMID: 29196969
Protein structure determination using nuclear magnetic resonance (NMR) spectroscopy can be both time-consuming and labor intensive. Here we demonstrate how chemical shift threading can permit rapid, robust, and accurate protein...
6.
Wishart D, Djoumbou Feunang Y, Marcu A, Guo A, Liang K, Vazquez-Fresno R, et al.
Nucleic Acids Res
. 2017 Nov;
46(D1):D608-D617.
PMID: 29140435
The Human Metabolome Database or HMDB (www.hmdb.ca) is a web-enabled metabolomic database containing comprehensive information about human metabolites along with their biological roles, physiological concentrations, disease associations, chemical reactions, metabolic...
7.
Arndt D, Marcu A, Liang Y, Wishart D
Brief Bioinform
. 2017 Oct;
20(4):1560-1567.
PMID: 29028989
PHAST (PHAge Search Tool) and its successor PHASTER (PHAge Search Tool - Enhanced Release) have become two of the most widely used web servers for identifying putative prophages in bacterial...
8.
Ramirez-Gaona M, Marcu A, Pon A, Guo A, Sajed T, Wishart N, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D440-D445.
PMID: 27899612
YMDB or the Yeast Metabolome Database (http://www.ymdb.ca/) is a comprehensive database containing extensive information on the genome and metabolome of Saccharomyces cerevisiae Initially released in 2012, the YMDB has gone...
9.
Babicki S, Arndt D, Marcu A, Liang Y, Grant J, Maciejewski A, et al.
Nucleic Acids Res
. 2016 May;
44(W1):W147-53.
PMID: 27190236
Heatmapper is a freely available web server that allows users to interactively visualize their data in the form of heat maps through an easy-to-use graphical interface. Unlike existing non-commercial heat...
10.
Arndt D, Grant J, Marcu A, Sajed T, Pon A, Liang Y, et al.
Nucleic Acids Res
. 2016 May;
44(W1):W16-21.
PMID: 27141966
PHASTER (PHAge Search Tool - Enhanced Release) is a significant upgrade to the popular PHAST web server for the rapid identification and annotation of prophage sequences within bacterial genomes and...