Dave Bouvier
Overview
Explore the profile of Dave Bouvier including associated specialties, affiliations and a list of published articles.
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11
Citations
3073
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Recent Articles
1.
Guerler A, Baker D, van den Beek M, Gruening B, Bouvier D, Coraor N, et al.
BMC Bioinformatics
. 2023 Jun;
24(1):263.
PMID: 37353753
Background: Protein-protein interactions play a crucial role in almost all cellular processes. Identifying interacting proteins reveals insight into living organisms and yields novel drug targets for disease treatment. Here, we...
2.
Lucaci A, Zehr J, Shank S, Bouvier D, Ostrovsky A, Mei H, et al.
PLoS One
. 2022 Nov;
17(11):e0275623.
PMID: 36322581
An important unmet need revealed by the COVID-19 pandemic is the near-real-time identification of potentially fitness-altering mutations within rapidly growing SARS-CoV-2 lineages. Although powerful molecular sequence analysis methods are available...
3.
Vijaykrishna N, Joshi J, Coraor N, Hillman-Jackson J, Bouvier D, van den Beek M, et al.
Bioinform Adv
. 2022 Jun;
2(1):vbac030.
PMID: 35669346
Summary: Properly and effectively managing reference datasets is an important task for many bioinformatics analyses. Refgenie is a reference asset management system that allows users to easily organize, retrieve and...
4.
Lucaci A, Zehr J, Shank S, Bouvier D, Mei H, Nekrutenko A, et al.
bioRxiv
. 2022 Jan;
PMID: 35075458
Availability: RASCL is available from a dedicated repository at https://github.com/veg/RASCL and as a Galaxy workflow https://usegalaxy.eu/u/hyphy/w/rascl . Existing clade/variant analysis results are available here: https://observablehq.com/@aglucaci/rascl . Contact: Dr. Sergei L...
5.
Maier W, Bray S, van den Beek M, Bouvier D, Coraor N, Miladi M, et al.
Nat Biotechnol
. 2021 Sep;
39(10):1178-1179.
PMID: 34588690
No abstract available.
6.
Maier W, Bray S, van den Beek M, Bouvier D, Coraor N, Miladi M, et al.
bioRxiv
. 2021 Apr;
PMID: 33791701
The COVID-19 pandemic is the first global health crisis to occur in the age of big genomic data.Although data generation capacity is well established and sufficiently standardized, analytical capacity is...
7.
Ostrovsky A, Hillman-Jackson J, Bouvier D, Clements D, Afgan E, Blankenberg D, et al.
Curr Protoc
. 2021 Feb;
1(2):e31.
PMID: 33583104
Modern biology continues to become increasingly computational. Datasets are becoming progressively larger, more complex, and more abundant. The computational savviness necessary to analyze these data creates an ongoing obstacle for...
8.
Baker D, van den Beek M, Blankenberg D, Bouvier D, Chilton J, Coraor N, et al.
PLoS Pathog
. 2020 Aug;
16(8):e1008643.
PMID: 32790776
The current state of much of the Wuhan pneumonia virus (severe acute respiratory syndrome coronavirus 2 [SARS-CoV-2]) research shows a regrettable lack of data sharing and considerable analytical obfuscation. This...
9.
Kosakovsky Pond S, Poon A, Velazquez R, Weaver S, Hepler N, Murrell B, et al.
Mol Biol Evol
. 2019 Sep;
37(1):295-299.
PMID: 31504749
HYpothesis testing using PHYlogenies (HyPhy) is a scriptable, open-source package for fitting a broad range of evolutionary models to multiple sequence alignments, and for conducting subsequent parameter estimation and hypothesis...
10.
Afgan E, Baker D, Batut B, van den Beek M, Bouvier D, cech M, et al.
Nucleic Acids Res
. 2018 May;
46(W1):W537-W544.
PMID: 29790989
Galaxy (homepage: https://galaxyproject.org, main public server: https://usegalaxy.org) is a web-based scientific analysis platform used by tens of thousands of scientists across the world to analyze large biomedical datasets such as...