Stephen D Shank
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Explore the profile of Stephen D Shank including associated specialties, affiliations and a list of published articles.
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21
Citations
1068
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Recent Articles
1.
Rincon-Sandoval M, De-Kayne R, Shank S, Pirro S, Koou A, Abueg L, et al.
Nat Commun
. 2024 Nov;
15(1):10040.
PMID: 39567489
Habitat transitions have shaped the evolutionary trajectory of many clades. Sea catfishes (Ariidae) have repeatedly undergone ecological transitions, including colonizing freshwaters from marine environments, leading to an adaptive radiation in...
2.
Zehr J, Kosakovsky Pond S, Shank S, McQueary H, Grenier J, Whittaker G, et al.
Microbiol Spectr
. 2024 Oct;
12(11):e0086724.
PMID: 39373506
There are several examples of coronaviruses in the Betacoronavirus subgenus that have jumped from an animal to the human host. Studying how evolutionary factors shape coronaviruses in non-human hosts may...
3.
Guerler A, Baker D, van den Beek M, Gruening B, Bouvier D, Coraor N, et al.
BMC Bioinformatics
. 2023 Jun;
24(1):263.
PMID: 37353753
Background: Protein-protein interactions play a crucial role in almost all cellular processes. Identifying interacting proteins reveals insight into living organisms and yields novel drug targets for disease treatment. Here, we...
4.
Zehr J, Kosakovsky Pond S, Millet J, Olarte-Castillo X, Lucaci A, Shank S, et al.
Virus Evol
. 2023 Apr;
9(1):vead019.
PMID: 37038392
Feline coronaviruses (FCoVs) commonly cause mild enteric infections in felines worldwide (termed feline enteric coronavirus [FECV]), with around 12 per cent developing into deadly feline infectious peritonitis (FIP; feline infectious...
5.
Zehr J, Kosakovsky Pond S, Millet J, Olarte-Castillo X, Lucaci A, Shank S, et al.
bioRxiv
. 2023 Jan;
PMID: 36712007
Feline Coronaviruses (FCoVs) commonly cause mild enteric infections in felines worldwide (termed Feline Enteric Coronavirus [FECV]), with around 12% developing into deadly Feline Infectious Peritonitis (FIP; Feline Infectious Peritonitis Virus...
6.
Lucaci A, Zehr J, Shank S, Bouvier D, Ostrovsky A, Mei H, et al.
PLoS One
. 2022 Nov;
17(11):e0275623.
PMID: 36322581
An important unmet need revealed by the COVID-19 pandemic is the near-real-time identification of potentially fitness-altering mutations within rapidly growing SARS-CoV-2 lineages. Although powerful molecular sequence analysis methods are available...
7.
Wertheim J, Wang J, Leelawong M, Martin D, Havens J, Chowdhury M, et al.
Nat Commun
. 2022 Jun;
13(1):3645.
PMID: 35752633
Recombination is an evolutionary process by which many pathogens generate diversity and acquire novel functions. Although a common occurrence during coronavirus replication, detection of recombination is only feasible when genetically...
8.
Martin D, Lytras S, Lucaci A, Maier W, Gruning B, Shank S, et al.
Mol Biol Evol
. 2022 Mar;
39(4).
PMID: 35325204
Among the 30 nonsynonymous nucleotide substitutions in the Omicron S-gene are 13 that have only rarely been seen in other SARS-CoV-2 sequences. These mutations cluster within three functionally important regions...
9.
Lucaci A, Zehr J, Shank S, Bouvier D, Mei H, Nekrutenko A, et al.
bioRxiv
. 2022 Jan;
PMID: 35075458
Availability: RASCL is available from a dedicated repository at https://github.com/veg/RASCL and as a Galaxy workflow https://usegalaxy.eu/u/hyphy/w/rascl . Existing clade/variant analysis results are available here: https://observablehq.com/@aglucaci/rascl . Contact: Dr. Sergei L...
10.
Martin D, Lytras S, Lucaci A, Maier W, Gruning B, Shank S, et al.
bioRxiv
. 2022 Jan;
PMID: 35075456
Among the 30 non-synonymous nucleotide substitutions in the Omicron S-gene are 13 that have only rarely been seen in other SARS-CoV-2 sequences. These mutations cluster within three functionally important regions...