Danny Antaki
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Explore the profile of Danny Antaki including associated specialties, affiliations and a list of published articles.
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19
Citations
2646
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Recent Articles
11.
Breuss M, Antaki D, George R, Kleiber M, James K, Ball L, et al.
Nat Med
. 2019 Dec;
26(1):143-150.
PMID: 31873310
De novo mutations arising on the paternal chromosome make the largest known contribution to autism risk, and correlate with paternal age at the time of conception. The recurrence risk for...
12.
Pagel K, Antaki D, Lian A, Mort M, Cooper D, Sebat J, et al.
PLoS Comput Biol
. 2019 Jun;
15(6):e1007112.
PMID: 31199787
Differentiation between phenotypically neutral and disease-causing genetic variation remains an open and relevant problem. Among different types of variation, non-frameshifting insertions and deletions (indels) represent an understudied group with widespread...
13.
Chaisson M, Sanders A, Zhao X, Malhotra A, Porubsky D, Rausch T, et al.
Nat Commun
. 2019 Apr;
10(1):1784.
PMID: 30992455
The incomplete identification of structural variants (SVs) from whole-genome sequencing data limits studies of human genetic diversity and disease association. Here, we apply a suite of long-read, short-read, strand-specific sequencing...
14.
Brandler W, Antaki D, Gujral M, Kleiber M, Whitney J, Maile M, et al.
Science
. 2018 Apr;
360(6386):327-331.
PMID: 29674594
The genetic basis of autism spectrum disorder (ASD) is known to consist of contributions from de novo mutations in variant-intolerant genes. We hypothesize that rare inherited structural variants in cis-regulatory...
15.
Antaki D, Brandler W, Sebat J
Bioinformatics
. 2018 Jan;
34(10):1774-1777.
PMID: 29300834
Motivation: Structural variation (SV) detection from short-read whole genome sequencing is error prone, presenting significant challenges for population or family-based studies of disease. Results: Here, we describe SV2, a machine-learning...
16.
Marshall C, Howrigan D, Merico D, Thiruvahindrapuram B, Wu W, Greer D, et al.
Nat Genet
. 2016 Nov;
49(1):27-35.
PMID: 27869829
Copy number variants (CNVs) have been strongly implicated in the genetic etiology of schizophrenia (SCZ). However, genome-wide investigation of the contribution of CNV to risk has been hampered by limited...
17.
Brandler W, Antaki D, Gujral M, Noor A, Rosanio G, Chapman T, et al.
Am J Hum Genet
. 2016 Mar;
98(4):667-79.
PMID: 27018473
Genetic studies of autism spectrum disorder (ASD) have established that de novo duplications and deletions contribute to risk. However, ascertainment of structural variants (SVs) has been restricted by the coarse...
18.
Sudmant P, Rausch T, Gardner E, Handsaker R, Abyzov A, Huddleston J, et al.
Nature
. 2015 Oct;
526(7571):75-81.
PMID: 26432246
Structural variants are implicated in numerous diseases and make up the majority of varying nucleotides among human genomes. Here we describe an integrated set of eight structural variant classes comprising...
19.
Mori M, Kovalenko L, Lyonnais S, Antaki D, Torbett B, Botta M, et al.
Curr Top Microbiol Immunol
. 2015 Mar;
389:53-92.
PMID: 25749978
The currently available anti-HIV-1 therapeutics is highly beneficial to infected patients. However, clinical failures occur as a result of the ability of HIV-1 to rapidly mutate. One approach to overcome...