Daniel W A Buchan
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Explore the profile of Daniel W A Buchan including associated specialties, affiliations and a list of published articles.
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19
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2430
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Recent Articles
1.
Buchan D, Moffat L, Lau A, Kandathil S, Jones D
Nucleic Acids Res
. 2024 May;
52(W1):W287-W293.
PMID: 38747351
The PSIRED Workbench is a long established and popular bioinformatics web service offering a wide range of machine learning based analyses for characterizing protein structure and function. In this paper...
2.
Waman V, Blundell T, Buchan D, Gough J, Jones D, Kelley L, et al.
Methods Mol Biol
. 2020 Jul;
2165:27-67.
PMID: 32621218
Genome3D consortium is a collaborative project involving protein structure prediction and annotation resources developed by six world-leading structural bioinformatics groups, based in the United Kingdom (namely Blundell, Murzin, Gough, Sternberg,...
3.
Sillitoe I, Andreeva A, Blundell T, Buchan D, Finn R, Gough J, et al.
Nucleic Acids Res
. 2019 Nov;
48(D1):D314-D319.
PMID: 31733063
Genome3D (https://www.genome3d.eu) is a freely available resource that provides consensus structural annotations for representative protein sequences taken from a selection of model organisms. Since the last NAR update in 2015,...
4.
Buchan D, Jones D
Proteins
. 2019 Nov;
88(4):616-624.
PMID: 31703152
In this paper, using Word2vec, a widely-used natural language processing method, we demonstrate that protein domains may have a learnable implicit semantic "meaning" in the context of their functional contributions...
5.
Buchan D, Jones D
Nucleic Acids Res
. 2019 Jun;
47(W1):W402-W407.
PMID: 31251384
The PSIPRED Workbench is a web server offering a range of predictive methods to the bioscience community for 20 years. Here, we present the work we have completed to update...
6.
Buchan D, Jones D
Proteins
. 2017 Sep;
86 Suppl 1:78-83.
PMID: 28901583
In this paper, we present the results for the MetaPSICOV2 contact prediction server in the CASP12 community experiment (http://predictioncenter.org). Over the 35 assessed Free Modelling target domains the MetaPSICOV2 server...
7.
Kosciolek T, Buchan D, Jones D
Sci Rep
. 2017 Aug;
7(1):6999.
PMID: 28765603
Intrinsically disordaered proteins (IDPs) are a prevalent phenomenon with over 30% of human proteins estimated to have long disordered regions. Computational methods are widely used to study IDPs, however, nearly...
8.
Buchan D, Jones D
Bioinformatics
. 2017 Apr;
33(17):2684-2690.
PMID: 28419258
Motivation: Protein fold recognition when appropriate, evolutionarily-related, structural templates can be identified is often trivial and may even be viewed as a solved problem. However in cases where no homologous...
9.
Lewis T, Sillitoe I, Andreeva A, Blundell T, Buchan D, Chothia C, et al.
Nucleic Acids Res
. 2014 Oct;
43(Database issue):D382-6.
PMID: 25348407
Genome3D (http://www.genome3d.eu) is a collaborative resource that provides predicted domain annotations and structural models for key sequences. Since introducing Genome3D in a previous NAR paper, we have substantially extended and...
10.
Buchan D, Minneci F, Nugent T, Bryson K, Jones D
Nucleic Acids Res
. 2013 Jun;
41(Web Server issue):W349-57.
PMID: 23748958
Here, we present the new UCL Bioinformatics Group's PSIPRED Protein Analysis Workbench. The Workbench unites all of our previously available analysis methods into a single web-based framework. The new web...