Daniel S Ziemianowicz
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Explore the profile of Daniel S Ziemianowicz including associated specialties, affiliations and a list of published articles.
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10
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90
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Recent Articles
1.
Ziemianowicz D, Kosinski J
Curr Opin Struct Biol
. 2022 Oct;
77:102488.
PMID: 36279817
Integrative structural modeling enables structure determination of macromolecules and their complexes by integrating data from multiple sources. It has been successfully used to characterize macromolecular structures when a single structural...
2.
Ziemianowicz D, Saltzberg D, Pells T, Crowder D, Schrader C, Hepburn M, et al.
Mol Cell Proteomics
. 2021 Aug;
20:100139.
PMID: 34418567
Proteomics methodology has expanded to include protein structural analysis, primarily through cross-linking mass spectrometry (XL-MS) and hydrogen-deuterium exchange mass spectrometry (HX-MS). However, while the structural proteomics community has effective tools...
3.
Beckham K, Ritter C, Chojnowski G, Ziemianowicz D, Mullapudi E, Rettel M, et al.
Sci Adv
. 2021 Jun;
7(26).
PMID: 34172453
The ESX-5 type VII secretion system is a membrane-spanning protein complex key to the virulence of mycobacterial pathogens. However, the overall architecture of the fully assembled translocation machinery and the...
4.
Jenkins M, Harris N, Dalwadi U, Fleming K, Ziemianowicz D, Rafiei A, et al.
Commun Biol
. 2020 Dec;
3(1):735.
PMID: 33277614
The TRAnsport Protein Particle (TRAPP) complexes act as Guanine nucleotide exchange factors (GEFs) for Rab GTPases, which are master regulators of membrane trafficking in eukaryotic cells. In metazoans, there are...
5.
Ziemianowicz D, Sarpe V, Crowder D, Pells T, Raval S, Hepburn M, et al.
J Proteomics
. 2020 Jun;
225:103844.
PMID: 32480078
Structural Mass Spectrometry (SMS) provides a comprehensive toolbox for the analysis of protein structure and function. It offers multiple sources of structural information that are increasingly useful for integrative structural...
6.
Ziemianowicz D, MacCallum J, Schriemer D
J Am Soc Mass Spectrom
. 2020 Feb;
31(2):207-216.
PMID: 32031402
The functional properties of a protein are strongly influenced by its topography, or the solvent-facing contour map of its surface. Together with crosslinking, covalent labeling mass spectrometry (CL-MS) has the...
7.
Ziemianowicz D, Sarpe V, Schriemer D
Anal Chem
. 2019 Jun;
91(13):8492-8499.
PMID: 31198032
Covalent labeling with mass spectrometry (CL-MS) provides a direct measure of the chemical and structural features of proteins with the potential for resolution at the amino-acid level. Unfortunately, most applications...
8.
Ziemianowicz D, Ng D, Schryvers A, Schriemer D
J Proteome Res
. 2018 Dec;
18(3):934-946.
PMID: 30582701
Structure-based approaches to the delineation of immunogens for vaccine development have a throughput requirement that is difficult to meet in practice with conventional methods of structure determination. Here we present...
9.
Schrader C, Ziemianowicz D, Merx K, Schriemer D
Anal Chem
. 2018 Feb;
90(5):3083-3090.
PMID: 29405698
Dynamic post-translational modifications of histones regulate transcriptional gene expression in eukaryotes. Unique combinations of modifications, almost exclusively displayed at the flexible N-terminal tails on histones, create distributions of proteoforms that...
10.
Ziemianowicz D, Bomgarden R, Etienne C, Schriemer D
J Am Soc Mass Spectrom
. 2017 Aug;
28(10):2011-2021.
PMID: 28799075
Mapping proteins with chemical reagents and mass spectrometry can generate a measure of accessible surface area, which in turn can be used to support the modeling and refinement of protein...