Daniel McDonald
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Explore the profile of Daniel McDonald including associated specialties, affiliations and a list of published articles.
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Recent Articles
11.
Guccione C, Patel L, Tomofuji Y, McDonald D, Gonzalez A, Sepich-Poore G, et al.
Res Sq
. 2024 Nov;
PMID: 39502785
As next-generation sequencing technologies produce deeper genome coverages at lower costs, there is a critical need for reliable computational host DNA removal in metagenomic data. We find that insufficient host...
12.
Tran M, Chera B, Shrake K, Depaoli B, Duffy 3rd E, Hall M, et al.
Pract Radiat Oncol
. 2024 Nov;
PMID: 39490921
Purpose: Difficulties and delays in insurance preauthorization (preauth) can negatively impact patient care, resulting in postponing, modifying, or even canceling radiation therapy for patients. We aimed to perform a root...
13.
Zhu Q, Huang S, Gonzalez A, McGrath I, McDonald D, Haiminen N, et al.
mSystems
. 2024 Oct;
9(11):e0128924.
PMID: 39422474
No abstract available.
14.
Zhao H, Kvitne K, Brungs C, Mohan S, Charron-Lamoureux V, Bittremieux W, et al.
bioRxiv
. 2024 Oct;
PMID: 39416075
Despite extensive efforts, extracting information on medication exposure from clinical records remains challenging. To complement this approach, we developed the tandem mass spectrometry (MS/MS) based GNPS Drug Library. This resource...
15.
Nonejuie P, Wilantho A, McDonald D, Htoo H, Chalerm J, Tripathi A, et al.
Sci Rep
. 2024 Oct;
14(1):23858.
PMID: 39394230
Recent research highlights the significant impact of the gut microbiota on health and disease. Thalassemia, a hereditary blood disorder, requires regular blood transfusions, leading to an accumulation of iron in...
16.
Brennan C, Belda-Ferre P, Zuffa S, Charron-Lamoureux V, Mohanty I, Ackermann G, et al.
mSystems
. 2024 Sep;
9(10):e0098524.
PMID: 39283083
Importance: Understanding dynamic microbial communities typically requires large-scale studies. However, handling large numbers of samples introduces many challenges, with cross-contamination being a major issue. It not only complicates analysis but...
17.
Kang J, Khatib L, Heston M, Dilmore A, Labus J, Deming Y, et al.
medRxiv
. 2024 Sep;
PMID: 39281749
Background: The gut microbiome is a potentially modifiable factor in Alzheimer's disease (AD); however, understanding of its composition and function regarding AD pathology is limited. Methods: Shallow-shotgun metagenomic data was...
18.
Lukacz E, Fok C, Bryant M, Rodriguez-Ponciano D, Meister M, Mueller M, et al.
Urogynecology (Phila)
. 2024 Jul;
30(11):896-905.
PMID: 38958286
Importance: Feasibility of home urogenital microbiome specimen collection is unknown. Objectives: This study aimed to evaluate successful sample collection rates from home and clinical research centers. Study Design: Adult women...
19.
Kullberg R, Wikki I, Haak B, Kauko A, Galenkamp H, Peters-Sengers H, et al.
Lancet Microbe
. 2024 Jun;
5(9):100864.
PMID: 38909617
Background: Microbiota alterations are common in patients hospitalised for severe infections, and preclinical models have shown that anaerobic butyrate-producing gut bacteria protect against systemic infections. However, the relationship between microbiota...
20.
Jiang Y, McDonald D, Perry D, Knight R, Mirarab S
Bioinformatics
. 2024 Jun;
40(6).
PMID: 38870525
Motivation: Phylogenetic placement of a query sequence on a backbone tree is increasingly used across biomedical sciences to identify the content of a sample from its DNA content. The accuracy...