Daniel M Staines
Overview
Explore the profile of Daniel M Staines including associated specialties, affiliations and a list of published articles.
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Articles
12
Citations
2547
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0
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Recent Articles
1.
Howe K, Contreras-Moreira B, De Silva N, Maslen G, Akanni W, Allen J, et al.
Nucleic Acids Res
. 2019 Oct;
48(D1):D689-D695.
PMID: 31598706
Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org). Together, the...
2.
Cunningham F, Achuthan P, Akanni W, Allen J, Amode M, Armean I, et al.
Nucleic Acids Res
. 2018 Nov;
47(D1):D745-D751.
PMID: 30407521
The Ensembl project (https://www.ensembl.org) makes key genomic data sets available to the entire scientific community without restrictions. Ensembl seeks to be a fundamental resource driving scientific progress by creating, maintaining...
3.
Bolser D, Staines D, Perry E, Kersey P
Methods Mol Biol
. 2016 Dec;
1533:1-31.
PMID: 27987162
Ensembl Plants ( http://plants.ensembl.org ) is an integrative resource presenting genome-scale information for 39 sequenced plant species. Available data includes genome sequence, gene models, functional annotation, and polymorphic loci; for...
4.
Aken B, Achuthan P, Akanni W, Amode M, Bernsdorff F, Bhai J, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D635-D642.
PMID: 27899575
Ensembl (www.ensembl.org) is a database and genome browser for enabling research on vertebrate genomes. We import, analyse, curate and integrate a diverse collection of large-scale reference data to create a...
5.
Kersey P, Allen J, Armean I, Boddu S, Bolt B, Carvalho-Silva D, et al.
Nucleic Acids Res
. 2015 Nov;
44(D1):D574-80.
PMID: 26578574
Ensembl Genomes (http://www.ensemblgenomes.org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics developed in the context of the Ensembl project (http://www.ensembl.org). Together, the...
6.
Bolser D, Staines D, Pritchard E, Kersey P
Methods Mol Biol
. 2015 Nov;
1374:115-40.
PMID: 26519403
Ensembl Plants ( http://plants.ensembl.org ) is an integrative resource presenting genome-scale information for a growing number of sequenced plant species (currently 33). Data provided includes genome sequence, gene models, functional...
7.
Pedro H, Maheswari U, Urban M, Irvine A, Cuzick A, McDowall M, et al.
Nucleic Acids Res
. 2015 Oct;
44(D1):D688-93.
PMID: 26476449
PhytoPath (www.phytopathdb.org) is a resource for genomic and phenotypic data from plant pathogen species, that integrates phenotypic data for genes from PHI-base, an expertly curated catalog of genes with experimentally...
8.
Medina-Rivera A, Defrance M, Sand O, Herrmann C, Castro-Mondragon J, Delerce J, et al.
Nucleic Acids Res
. 2015 Apr;
43(W1):W50-6.
PMID: 25904632
RSAT (Regulatory Sequence Analysis Tools) is a modular software suite for the analysis of cis-regulatory elements in genome sequences. Its main applications are (i) motif discovery, appropriate to genome-wide data...
9.
Smedley D, Haider S, Durinck S, Pandini L, Provero P, Allen J, et al.
Nucleic Acids Res
. 2015 Apr;
43(W1):W589-98.
PMID: 25897122
The BioMart Community Portal (www.biomart.org) is a community-driven effort to provide a unified interface to biomedical databases that are distributed worldwide. The portal provides access to numerous database projects supported...
10.
McDowall M, Harris M, Lock A, Rutherford K, Staines D, Bahler J, et al.
Nucleic Acids Res
. 2014 Nov;
43(Database issue):D656-61.
PMID: 25361970
PomBase (http://www.pombase.org) is the model organism database for the fission yeast Schizosaccharomyces pombe. PomBase provides a central hub for the fission yeast community, supporting both exploratory and hypothesis-driven research. It...