Daniel Lopez-Ferrer
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Explore the profile of Daniel Lopez-Ferrer including associated specialties, affiliations and a list of published articles.
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39
Citations
1476
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Recent Articles
1.
Bi Y, Shrestha R, Zhang Z, Hsu C, Reyes A, Karunadasa S, et al.
Plant Cell
. 2023 Feb;
35(5):1318-1333.
PMID: 36739885
The recent discovery of SPINDLY (SPY)-catalyzed protein O-fucosylation revealed a novel mechanism for regulating nucleocytoplasmic protein functions in plants. Genetic evidence indicates the important roles of SPY in diverse developmental...
2.
Jackson K, Antunes D, Talukder A, Maleki A, Amagai K, Salmon A, et al.
PNAS Nexus
. 2022 Aug;
1(3):pgac124.
PMID: 36003074
Human leukocyte antigen class I (HLA-I) molecules bind and present peptides at the cell surface to facilitate the induction of appropriate CD8+ T cell-mediated immune responses to pathogen- and self-derived...
3.
Furtwangler B, Uresin N, Motamedchaboki K, Huguet R, Lopez-Ferrer D, Zabrouskov V, et al.
Mol Cell Proteomics
. 2022 Feb;
21(4):100219.
PMID: 35219906
In the young field of single-cell proteomics (scMS), there is a great need for improved global proteome characterization, both in terms of proteins quantified per cell and quantitative performance thereof....
4.
Cong Y, Motamedchaboki K, Misal S, Liang Y, Guise A, Truong T, et al.
Chem Sci
. 2021 Jun;
12(3):1001-1006.
PMID: 34163866
We report on the combination of nanodroplet sample preparation, ultra-low-flow nanoLC, high-field asymmetric ion mobility spectrometry (FAIMS), and the latest-generation Orbitrap Eclipse Tribrid mass spectrometer for greatly improved single-cell proteome...
5.
Zolg D, Gessulat S, Paschke C, Graber M, Rathke-Kuhnert M, Seefried F, et al.
Rapid Commun Mass Spectrom
. 2021 May;
:e9128.
PMID: 34015160
Database search engines for bottom-up proteomics largely ignore peptide fragment ion intensities during the automated scoring of tandem mass spectra against protein databases. Recent advances in deep learning allow the...
6.
Carrera M, Canas B, Lopez-Ferrer D
Methods Mol Biol
. 2021 Mar;
2259:259-268.
PMID: 33687721
In this chapter, we describe a rapid workflow for the shotgun global phosphoproteomics analysis. The strategy is based on the use of accelerated in-solution trypsin digestion under an ultrasonic field...
7.
Stopfer L, Flower C, Gajadhar A, Patel B, Gallien S, Lopez-Ferrer D, et al.
Cancer Res
. 2021 Jan;
81(9):2495-2509.
PMID: 33509940
Tyrosine phosphorylation (pTyr) plays a pivotal role in signal transduction and is commonly dysregulated in cancer. As a result, profiling tumor pTyr levels may reveal therapeutic insights critical to combating...
8.
Rezinciuc S, Bezavada L, Bahadoran A, Duan S, Wang R, Lopez-Ferrer D, et al.
PLoS Pathog
. 2020 Oct;
16(10):e1008957.
PMID: 33104753
Infection with the influenza virus triggers an innate immune response that initiates the adaptive response to halt viral replication and spread. However, the metabolic response fueling the molecular mechanisms underlying...
9.
Hope K, Johnson D, Miller P, Lopez-Ferrer D, Kakhniashvili D, Reiter L
Neurobiol Dis
. 2020 Apr;
141:104879.
PMID: 32344153
Epilepsy affects millions of individuals worldwide and many cases are pharmacoresistant. Duplication 15q syndrome (Dup15q) is a genetic disorder caused by duplications of the 15q11.2-q13.1 region. Phenotypes include a high...
10.
Cong Y, Liang Y, Motamedchaboki K, Huguet R, Truong T, Zhao R, et al.
Anal Chem
. 2020 Jan;
92(3):2665-2671.
PMID: 31913019
Single-cell proteomics can provide unique insights into biological processes by resolving heterogeneity that is obscured by bulk measurements. Gains in the overall sensitivity and proteome coverage through improvements in sample...