Daniel E Cook
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Explore the profile of Daniel E Cook including associated specialties, affiliations and a list of published articles.
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39
Citations
1480
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Recent Articles
1.
Al Bakir M, Reading J, Gamble S, Rosenthal R, Uddin I, Rowan A, et al.
Nature
. 2025 Feb;
PMID: 39972134
Neoantigen vaccines are under investigation for various cancers, including epidermal growth factor receptor (EGFR)-driven lung cancers. We tracked the phylogenetic history of an EGFR mutant lung cancer treated with erlotinib,...
2.
Mastoras M, Asri M, Brambrink L, Hebbar P, Kolesnikov A, Cook D, et al.
bioRxiv
. 2024 Sep;
PMID: 39345401
Accurate genome assemblies are essential for biological research, but even the highest quality assemblies retain errors caused by the technologies used to construct them. Base-level errors are typically fixed with...
3.
Park J, Cook D, Chang P, Kolesnikov A, Brambrink L, Mier J, et al.
bioRxiv
. 2024 Sep;
PMID: 39229187
Somatic variant detection is an integral part of cancer genomics analysis. While most methods have focused on short-read sequencing, long-read technologies now offer potential advantages in terms of repeat mapping...
4.
Frankell A, Dietzen M, Al Bakir M, Lim E, Karasaki T, Ward S, et al.
Nature
. 2024 Jul;
631(8022):E15.
PMID: 38965439
No abstract available.
5.
Yang H, Lee D, Kim H, Cook D, Paik Y, Andersen E, et al.
Proc Natl Acad Sci U S A
. 2024 Jul;
121(28):e2320796121.
PMID: 38959036
Phoresy is an interspecies interaction that facilitates spatial dispersal by attaching to a more mobile species. Hitchhiking species have evolved specific traits for physical contact and successful phoresy, but the...
6.
Hynds R, Huebner A, Pearce D, Hill M, Akarca A, Moore D, et al.
Nat Commun
. 2024 May;
15(1):4653.
PMID: 38821942
Patient-derived xenograft (PDX) models are widely used in cancer research. To investigate the genomic fidelity of non-small cell lung cancer PDX models, we established 48 PDX models from 22 patients...
7.
Makova K, Pickett B, Harris R, Hartley G, Cechova M, Pal K, et al.
Nature
. 2024 May;
630(8016):401-411.
PMID: 38811727
Apes possess two sex chromosomes-the male-specific Y chromosome and the X chromosome, which is present in both males and females. The Y chromosome is crucial for male reproduction, with deletions...
8.
Keskus A, Bryant A, Ahmad T, Yoo B, Aganezov S, Goretsky A, et al.
medRxiv
. 2024 Apr;
PMID: 38585974
Most current studies rely on short-read sequencing to detect somatic structural variation (SV) in cancer genomes. Long-read sequencing offers the advantage of better mappability and long-range phasing, which results in...
9.
Makova K, Pickett B, Harris R, Hartley G, Cechova M, Pal K, et al.
bioRxiv
. 2023 Dec;
PMID: 38077089
Apes possess two sex chromosomes-the male-specific Y and the X shared by males and females. The Y chromosome is crucial for male reproduction, with deletions linked to infertility. The X...
10.
Saeed S, Ekhator C, Abdelaziz A, Naveed H, Karski A, Cook D, et al.
Cureus
. 2023 Sep;
15(8):e44304.
PMID: 37664362
This comprehensive narrative review delves into the intricate interplay between diet and inflammatory bowel disease (IBD), shedding light on the potential impact of dietary interventions in disease management. By analyzing...