D Benjamin Gordon
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Explore the profile of D Benjamin Gordon including associated specialties, affiliations and a list of published articles.
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33
Citations
4391
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Recent Articles
1.
Roehner N, Roberts J, Lapets A, Gould D, Akavoor V, Qin L, et al.
ACS Synth Biol
. 2024 Aug;
13(9):2899-2911.
PMID: 39162314
With the rise of new DNA part libraries and technologies for assembling DNA, synthetic biologists are increasingly constructing and screening combinatorial libraries to optimize their biological designs. As combinatorial libraries...
2.
Schimunek J, Seidl P, Elez K, Hempel T, Le T, Noe F, et al.
Mol Inform
. 2023 Oct;
43(1):e202300262.
PMID: 37833243
The COVID-19 pandemic continues to pose a substantial threat to human lives and is likely to do so for years to come. Despite the availability of vaccines, searching for efficient...
3.
Chemla Y, Dorfan Y, Yannai A, Meng D, Cao P, Glaven S, et al.
PLoS One
. 2022 Dec;
17(12):e0278471.
PMID: 36516154
Engineered bacteria could perform many functions in the environment, for example, to remediate pollutants, deliver nutrients to crops or act as in-field biosensors. Model organisms can be unreliable in the...
4.
Garcia B, Urrutia J, Zheng G, Becker D, Corbet C, Maschhoff P, et al.
Synth Biol (Oxf)
. 2022 Aug;
7(1):ysac012.
PMID: 36035514
Sequencing technologies, in particular RNASeq, have become critical tools in the design, build, test and learn cycle of synthetic biology. They provide a better understanding of synthetic designs, and they...
5.
King A, Anderson D, Glassey E, Segall-Shapiro T, Zhang Z, Niquille D, et al.
Nat Commun
. 2021 Nov;
12(1):6343.
PMID: 34732700
Peptide secondary metabolites are common in nature and have diverse pharmacologically-relevant functions, from antibiotics to cross-kingdom signaling. Here, we present a method to design large libraries of modified peptides in...
6.
Eslami M, Borujeni A, Eramian H, Weston M, Zheng G, Urrutia J, et al.
Bioinformatics
. 2021 Sep;
38(2):404-409.
PMID: 34570169
Motivation: Applications in synthetic and systems biology can benefit from measuring whole-cell response to biochemical perturbations. Execution of experiments to cover all possible combinations of perturbations is infeasible. In this...
7.
Pandey R, Casini A, Voigt C, Gordon D
ACS Synth Biol
. 2021 Sep;
10(9):2187-2196.
PMID: 34491727
Benzylamine is a commodity chemical used in the synthesis of motion-sickness treatments and anticonvulsants, in dyeing textiles, and as a precursor to the high-energy propellant CL-20. Because chemical production generates...
8.
Buren S, Pratt K, Jiang X, Guo Y, Jimenez-Vicente E, Echavarri-Erasun C, et al.
Proc Natl Acad Sci U S A
. 2019 Nov;
116(50):25078-25086.
PMID: 31767756
The radical -adenosylmethionine (SAM) enzyme NifB occupies a central and essential position in nitrogenase biogenesis. NifB catalyzes the formation of an [8Fe-9S-C] cluster, called NifB-co, which constitutes the core of...
9.
Meyer A, Saaem I, Silverman A, Varaljay V, Mickol R, Blum S, et al.
ACS Synth Biol
. 2019 Nov;
8(12):2746-2755.
PMID: 31750651
Organism engineering requires the selection of an appropriate chassis, editing its genome, combining traits from different source species, and controlling genes with synthetic circuits. When a strain is needed for...
10.
Ostrov N, Beal J, Ellis T, Gordon D, Karas B, Lee H, et al.
Science
. 2019 Oct;
366(6463):310-312.
PMID: 31624201
No abstract available.