Colleen Reilly
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Explore the profile of Colleen Reilly including associated specialties, affiliations and a list of published articles.
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16
Citations
281
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Recent Articles
1.
Maldarelli M, Song H, Brown C, Situt M, Reilly C, Mahurkar A, et al.
JAMA Netw Open
. 2024 Dec;
7(12):e2450759.
PMID: 39671196
Importance: Intense wildfires affecting residential populations are increasingly frequent. However, the adverse cardiopulmonary consequences to patients from remote wildfire smoke exposure is uncertain. Objective: To investigate the association between wildfire...
2.
Matt G, Sioson E, Shelton K, Wang J, Lu C, Zaldivar Peraza A, et al.
Cancer Discov
. 2024 Dec;
14(12):2554.
PMID: 39618286
No abstract available.
3.
Rajput A, Reilly C, Zaldivar Peraza A, Wang J, Sioson E, Matt G, et al.
Comput Struct Biotechnol J
. 2024 Oct;
23:3467-3471.
PMID: 39430404
The ProteinPaint Hi-C tool (ppHiC) facilitates web-based visualization and collaborative exploration of Hi-C data, a vital resource for understanding three-dimensional genomic structures. ppHiC allows researchers to easily analyze large Hi-C...
4.
Polonen P, Di Giacomo D, Seffernick A, Elsayed A, Kimura S, Benini F, et al.
Nature
. 2024 Aug;
632(8027):1082-1091.
PMID: 39143224
T-lineage acute lymphoblastic leukaemia (T-ALL) is a high-risk tumour that has eluded comprehensive genomic characterization, which is partly due to the high frequency of noncoding genomic alterations that result in...
5.
Matt G, Sioson E, Shelton K, Wang J, Lu C, Zaldivar Peraza A, et al.
Cancer Discov
. 2024 Apr;
14(8):1403-1417.
PMID: 38593228
Childhood cancer survivorship studies generate comprehensive datasets comprising demographic, diagnosis, treatment, outcome, and genomic data from survivors. To broadly share this data, we created the St. Jude Survivorship Portal (https://survivorship.stjude.cloud),...
6.
Patel A, Ashenberg O, Collins N, Segerstolpe A, Jiang S, Slyper M, et al.
bioRxiv
. 2024 Jan;
PMID: 38260392
Neuroblastoma is a pediatric cancer arising from the developing sympathoadrenal lineage with complex inter- and intra-tumoral heterogeneity. To chart this complexity, we generated a comprehensive cell atlas of 55 neuroblastoma...
7.
Paul R, Wang J, Reilly C, Sioson E, Patel J, Matt G, et al.
Bioinformatics
. 2023 May;
39(5).
PMID: 37140547
Summary: ProteinPaint BAM track (ppBAM) is designed to assist variant review for cancer research and clinical genomics. With performant server-side computing and rendering, ppBAM supports on-the-fly variant genotyping of thousands...
8.
Wu L, Zhang F, Rao R, Adam M, Pollard K, Szabo S, et al.
Sci Adv
. 2022 Nov;
8(44):eabo5442.
PMID: 36322658
Malignant peripheral nerve sheath tumor (MPNST), a highly aggressive Schwann cell (SC)-derived soft tissue sarcoma, arises from benign neurofibroma (NF); however, the identity, heterogeneity and origins of tumor populations remain...
9.
Brady S, Roberts K, Gu Z, Shi L, Pounds S, Pei D, et al.
Nat Genet
. 2022 Sep;
54(9):1376-1389.
PMID: 36050548
Acute lymphoblastic leukemia (ALL) is the most common childhood cancer. Here, using whole-genome, exome and transcriptome sequencing of 2,754 childhood patients with ALL, we find that, despite a generally low...
10.
Patel A, Chen X, Huang X, Clay M, Komorova N, Krasin M, et al.
Dev Cell
. 2022 Apr;
57(10):1226-1240.e8.
PMID: 35483358
Rhabdomyosarcoma (RMS) is a pediatric cancer with features of skeletal muscle; patients with unresectable or metastatic RMS fare poorly due to high rates of disease recurrence. Here, we use single-cell...