Christian M Reidys
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Explore the profile of Christian M Reidys including associated specialties, affiliations and a list of published articles.
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Recent Articles
1.
Barrett C, Bura A, He Q, Huang F, Li T, Reidys C
RNA
. 2023 Oct;
30(1):1-15.
PMID: 37903545
We present a novel framework enhancing the prediction of whether novel lineage poses the threat of eventually dominating the viral population. The framework is based purely on genomic sequence data,...
2.
Chen R, McNitt J, Mortveit H, Pederson R, Reidys C
Chaos
. 2023 Mar;
33(2):023118.
PMID: 36859214
Mathematical models rooted in network representations are becoming increasingly more common for capturing a broad range of phenomena. Boolean networks (BNs) represent a mathematical abstraction suited for establishing general theory...
3.
Chen R, Reidys C, Waterman M
Bull Math Biol
. 2023 Feb;
85(3):21.
PMID: 36780044
The study of native motifs of RNA secondary structures helps us better understand the formation and eventually the functions of these molecules. Commonly known structural motifs include helices, hairpin loops,...
4.
Huang F, Barrett C, Reidys C
Algorithms Mol Biol
. 2021 Jun;
16(1):7.
PMID: 34074304
Background: Genotype-phenotype maps provide a meaningful filtration of sequence space and RNA secondary structures are particular such phenotypes. Compatible sequences, which satisfy the base-pairing constraints of a given RNA structure,...
5.
Barrett C, Bura A, He Q, Huang F, Li T, Waterman M, et al.
J Comput Biol
. 2020 Dec;
28(3):248-256.
PMID: 33275493
COVID-19 is an infectious disease caused by the severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2). The viral genome is considered to be relatively stable and the mutations that have been...
6.
Li T, Reidys C
Algorithms Mol Biol
. 2020 Aug;
15:15.
PMID: 32782456
Identifying the secondary structure of an RNA is crucial for understanding its diverse regulatory functions. This paper focuses on how to enhance target identification in a Boltzmann ensemble of structures...
7.
He Q, Huang F, Barrett C, Reidys C
RNA
. 2019 Sep;
25(12):1592-1603.
PMID: 31548338
Genetic robustness, the preservation of evolved phenotypes against genotypic mutations, is one of the central concepts in evolution. In recent years a large body of work has focused on the...
8.
Li T, Burris C, Reidys C
J Math Biol
. 2019 Jun;
79(3):791-822.
PMID: 31172257
In this paper we analyze the length-spectrum of blocks in [Formula: see text]-structures. [Formula: see text]-structures are a class of RNA pseudoknot structures that play a key role in the...
9.
Barrett C, He Q, Huang F, Reidys C
J Comput Biol
. 2019 Jan;
26(3):173-192.
PMID: 30653353
Recently, a framework considering RNA sequences and their RNA secondary structures as pairs led to some information-theoretic perspectives on how the semantics encoded in RNA sequences can be inferred. This...
10.
Barrett C, He Q, Huang F, Reidys C
J Comput Biol
. 2018 Aug;
25(11):1179-1192.
PMID: 30133328
Recently, a framework considering ribonucleic acid (RNA) sequences and their RNA secondary structures as pairs has led to new information theoretic perspectives on how the semantics encoded in RNA sequences...