Christian J Stoeckert Jr
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Explore the profile of Christian J Stoeckert Jr including associated specialties, affiliations and a list of published articles.
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Recent Articles
11.
Aurrecoechea C, Barreto A, Basenko E, Brestelli J, Brunk B, Cade S, et al.
Nucleic Acids Res
. 2016 Dec;
45(D1):D581-D591.
PMID: 27903906
The Eukaryotic Pathogen Genomics Database Resource (EuPathDB, http://eupathdb.org) is a collection of databases covering 170+ eukaryotic pathogens (protists & fungi), along with relevant free-living and non-pathogenic species, and select pathogen...
12.
Clayton H, Osipovich A, Stancill J, Schneider J, Vianna P, Shanks C, et al.
Cell Rep
. 2016 Nov;
17(8):2028-2041.
PMID: 27851966
Using a transgenic mouse model to express MafA, Pdx1, and Neurog3 (3TF) in a pancreatic acinar cell- and doxycycline-dependent manner, we discovered that the outcome of transcription factor-mediated acinar to...
13.
Brochhausen M, Zheng J, Birtwell D, Williams H, Masci A, Ellis H, et al.
J Biomed Semantics
. 2016 May;
7:23.
PMID: 27148435
Background: Biobanking necessitates extensive integration of data to allow data analysis and specimen sharing. Ontologies have been demonstrated to be a promising approach in fostering better semantic integration of biobank-related...
14.
Bandrowski A, Brinkman R, Brochhausen M, Brush M, Bug B, Chibucos M, et al.
PLoS One
. 2016 Apr;
11(4):e0154556.
PMID: 27128319
The Ontology for Biomedical Investigations (OBI) is an ontology that provides terms with precisely defined meanings to describe all aspects of how investigations in the biological and medical domains are...
15.
McCormick M, Manduchi E, Witschey W, Gorman R, Gorman 3rd J, Jiang Y, et al.
J Am Heart Assoc
. 2016 Apr;
5(4):e003170.
PMID: 27091183
Background: Unlike arteries, in which regionally distinct hemodynamics are associated with phenotypic heterogeneity, the relationships between endocardial endothelial cell phenotype and intraventricular flow remain largely unexplored. We investigated regional differences...
16.
Jiang Y, Manduchi E, Stoeckert Jr C, Davies P
BMC Genomics
. 2015 Jul;
16:506.
PMID: 26148682
Background: Atherosclerosis is a heterogeneously distributed disease of arteries in which the endothelium plays an important central role. Spatial transcriptome profiling of endothelium in pre-lesional arteries has demonstrated differential phenotypes...
17.
Osipovich A, Long Q, Manduchi E, Gangula R, Hipkens S, Schneider J, et al.
Development
. 2014 Jul;
141(15):2939-49.
PMID: 25053427
Insulinoma associated 1 (Insm1) plays an important role in regulating the development of cells in the central and peripheral nervous systems, olfactory epithelium and endocrine pancreas. To better define the...
18.
Dugan V, Emrich S, Giraldo-Calderon G, Harb O, Newman R, Pickett B, et al.
PLoS One
. 2014 Jun;
9(6):e99979.
PMID: 24936976
High throughput sequencing has accelerated the determination of genome sequences for thousands of human infectious disease pathogens and dozens of their vectors. The scale and scope of these data are...
19.
Zheng J, Xiang Z, Stoeckert Jr C, He Y
Bioinformatics
. 2014 Jan;
30(9):1340-2.
PMID: 24413522
Biomedical ontologies are often very large and complex. Only a subset of the ontology may be needed for a specified application or community. For ontology end users, it is desirable...
20.
Greenfest-Allen E, Malik J, Palis J, Stoeckert Jr C
BMC Syst Biol
. 2013 May;
7:38.
PMID: 23675896
Background: Hematopoietic ontogeny is characterized by overlapping waves of primitive, fetal definitive, and adult definitive erythroid lineages. Our aim is to identify differences in the transcriptional control of these distinct...