Charles C Kirkpatrick
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Explore the profile of Charles C Kirkpatrick including associated specialties, affiliations and a list of published articles.
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11
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103
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Recent Articles
1.
Chintala S, Tateiwa H, Qian M, Xu Y, Amtashar F, Chen Z, et al.
Br J Pharmacol
. 2024 Jul;
181(21):4229-4244.
PMID: 38978389
Background And Purpose: Neurosteroids are allosteric modulators of GABA currents, acting through several functional binding sites although their affinity and specificity for each site are unknown. The goal of this...
2.
Saon M, Kirkpatrick C, Znosko B
NAR Genom Bioinform
. 2023 Jan;
5(1):lqac102.
PMID: 36632613
One of the current methods for predicting RNA tertiary structure is fragment-based homology, which predicts tertiary structure from secondary structure. For a successful prediction, this method requires a library of...
3.
Hopfinger M, Kirkpatrick C, Znosko B
Nucleic Acids Res
. 2020 Aug;
48(16):8901-8913.
PMID: 32810273
The most popular RNA secondary structure prediction programs utilize free energy (ΔG°37) minimization and rely upon thermodynamic parameters from the nearest neighbor (NN) model. Experimental parameters are derived from a...
4.
Richardson K, Kirkpatrick C, Znosko B
Database (Oxford)
. 2020 Jan;
2020.
PMID: 31950189
The RNA Characterization of Secondary Structure Motifs, RNA CoSSMos, database is a freely accessible online database that allows users to identify secondary structure motifs among RNA 3D structures and explore...
5.
Richardson K, Adams M, Kirkpatrick C, Gohara D, Znosko B
Biochemistry
. 2019 Nov;
58(48):4809-4820.
PMID: 31714066
There is an abundance of RNA sequence information available due to the efforts of sequencing projects. However, current techniques implemented to solve the tertiary structures of RNA, such as NMR...
6.
Kirkpatrick C, Truong J, Kowert B
J Comput Chem
. 2016 Oct;
38(2):93-100.
PMID: 27785812
Electronic structure calculations for late transition metals coordinated by two dithiolene ligands are found to be consistent with existing structures and also predict the geometries of Ni(I) species for which...
7.
Bagwill C, Anderson C, Sullivan E, Manohara V, Murthy P, Kirkpatrick C, et al.
J Phys Chem A
. 2016 Oct;
120(46):9235-9243.
PMID: 27779403
A computational study aimed at accurately predicting the strength of the anion-π binding of substituted benzenes is presented. The anion-π binding energies (E) of 37 substituted benzenes and the parent...
8.
Vanegas P, Hudson G, Davis A, Kelly S, Kirkpatrick C, Znosko B
Nucleic Acids Res
. 2011 Dec;
40(Database issue):D439-44.
PMID: 22127861
RNA secondary structure is important for designing therapeutics, understanding protein-RNA binding and predicting tertiary structure of RNA. Several databases and downloadable programs exist that specialize in the three-dimensional (3D) structure...
9.
Withers C, Wright T, Viehland L, Grossman L, Kirkpatrick C, Lee E
J Chem Phys
. 2011 Jul;
135(2):024312.
PMID: 21766947
We present a systematic investigation of the accuracy of the various theories and basis sets that can be applied to study the interaction of Cl(-) ions with Ar atoms. It...
10.
Watt M, Hardebeck L, Kirkpatrick C, Lewis M
J Am Chem Soc
. 2011 Mar;
133(11):3854-62.
PMID: 21361361
Parallel face-to-face arene-arene complexes between benzene and substituted benzenes have been investigated at the MP2(full)/6-311G** and M05-2X/6-311G** levels of theory. A reasonably good correlation was found between the binding energies...