Cezary Czaplewski
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Explore the profile of Cezary Czaplewski including associated specialties, affiliations and a list of published articles.
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93
Citations
1070
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Recent Articles
1.
Co N, Czaplewski C, Lubecka E, Liwo A
J Chem Theory Comput
. 2025 Jan;
21(3):1476-1493.
PMID: 39851064
Time-averaged restraints from nuclear magnetic resonance (NMR) measurements have been implemented in the UNRES coarse-grained model of polypeptide chains in order to develop a tool for data-assisted modeling of the...
2.
Lubecka E, Czaplewski C, Sieradzan A, Lipska A, Dziadek L, Liwo A
Methods Mol Biol
. 2024 Nov;
2867:19-41.
PMID: 39576573
Secondary structure is a solid scaffold on which the three-dimensional structure of a protein is built. Therefore, care must be taken to reproduce the secondary structure as accurately as possible...
3.
Liwo A, Sikorska C, Lipska A, Sieradzan A, Atmaca S, Czaplewski C
Methods Mol Biol
. 2024 Nov;
2870:267-288.
PMID: 39543040
Coarse graining is usually considered as a tool to extend the time and size scale of simulations. However, leaving out the atomistic details to keep their fingerprints in a coarse-grained...
4.
Banasik M, Napolitano V, Blat A, Abdulkarim K, Plewka J, Czaplewski C, et al.
Int J Biol Macromol
. 2024 Sep;
280(Pt 4):135510.
PMID: 39304044
Peroxisomal protein import has been identified as a valid target in trypanosomiases, an important health threat in Central and South America. The importomer is built of multiple peroxins (Pex) and...
5.
Lesniewski M, Pyrka M, Czaplewski C, Co N, Jiang Y, Gong Z, et al.
J Chem Inf Model
. 2024 Feb;
64(4):1377-1393.
PMID: 38345917
The influence of distance restraints from chemical cross-link mass spectroscopy (XL-MS) on the quality of protein structures modeled with the coarse-grained UNRES force field was assessed by using a protocol...
6.
Roszczenko-Jasinska P, Gieldon A, Mazur D, Spodzieja M, Plichta M, Czaplewski C, et al.
Front Mol Biosci
. 2024 Jan;
10:1335704.
PMID: 38274095
is a bacterium that colonizes the gastric epithelium, which affects millions of people worldwide. infection can lead to various gastrointestinal diseases, including gastric adenocarcinoma and mucosa-associated lymphoid tissue lymphoma. Conventional...
7.
Lensink M, Brysbaert G, Raouraoua N, Bates P, Giulini M, Honorato R, et al.
Proteins
. 2023 Oct;
91(12):1658-1683.
PMID: 37905971
We present the results for CAPRI Round 54, the 5th joint CASP-CAPRI protein assembly prediction challenge. The Round offered 37 targets, including 14 homodimers, 3 homo-trimers, 13 heterodimers including 3...
8.
Lipska A, Sieradzan A, Atmaca S, Czaplewski C, Liwo A
J Phys Chem Lett
. 2023 Oct;
14(44):9824-9833.
PMID: 37889895
A reliable representation of local interactions is critical for the accuracy of modeling protein structure and dynamics at both the all-atom and coarse-grained levels. The development of local (mainly torsional)...
9.
Borges-Araujo L, Patmanidis I, Singh A, Santos L, Sieradzan A, Vanni S, et al.
J Chem Theory Comput
. 2023 Oct;
19(20):7112-7135.
PMID: 37788237
The molecular details involved in the folding, dynamics, organization, and interaction of proteins with other molecules are often difficult to assess by experimental techniques. Consequently, computational models play an ever-increasing...
10.
Liwo A, Pyrka M, Czaplewski C, Peng X, Niemi A
Biomolecules
. 2023 Jun;
13(6).
PMID: 37371521
Molecular motors are essential for the movement and transportation of macromolecules in living organisms. Among them, rotatory motors are particularly efficient. In this study, we investigated the long-term dynamics of...