Cassandria G Tay Fernandez
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Explore the profile of Cassandria G Tay Fernandez including associated specialties, affiliations and a list of published articles.
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11
Citations
26
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Recent Articles
1.
MacNish T, Al-Mamun H, Bayer P, McPhan C, Fernandez C, Upadhyaya S, et al.
Plant Genome
. 2024 Dec;
18(1):e20535.
PMID: 39648684
Brassicas are an economically important crop species that provide a source of healthy oil and vegetables. With the rising population and the impact of climate change on agriculture, there is...
2.
Danilevicz M, Gill M, Fernandez C, Petereit J, Upadhyaya S, Batley J, et al.
Comput Struct Biotechnol J
. 2023 Dec;
21:5676-5685.
PMID: 38058296
Long non-coding ribonucleic acids (lncRNAs) have been shown to play an important role in plant gene regulation, involving both epigenetic and transcript regulation. LncRNAs are transcripts longer than 200 nucleotides...
3.
Approaches to increase the validity of gene family identification using manual homology search tools
Nestor B, Bayer P, Fernandez C, Edwards D, Finnegan P
Genetica
. 2023 Oct;
151(6):325-338.
PMID: 37817002
Identifying homologs is an important process in the analysis of genetic patterns underlying traits and evolutionary relationships among species. Analysis of gene families is often used to form and support...
4.
Marsh J, Petereit J, Johnston B, Bayer P, Fernandez C, Al-Mamun H, et al.
Bioinformatics
. 2023 Aug;
39(8).
PMID: 37607004
Summary: Genome-wide association studies (GWAS) excels at harnessing dense genomic variant datasets to identify candidate regions responsible for producing a given phenotype. However, GWAS and traditional fine-mapping methods do not...
5.
Fernandez C, Bayer P, Petereit J, Varshney R, Batley J, Edwards D
Plant Genome
. 2023 Aug;
16(3):e20377.
PMID: 37602500
Many genome annotations include false-positive gene models, leading to errors in phylogenetic and comparative studies. Here, we propose a method to support gene model prediction based on evolutionary conservation and...
6.
Marsh J, Nestor B, Petereit J, Fernandez C, Bayer P, Batley J, et al.
Plant J
. 2023 Mar;
115(1):68-80.
PMID: 36970933
Pod dehiscence is a major source of yield loss in legumes, which is exacerbated by aridity. Disruptive mutations in "Pod indehiscent 1" (PDH1), a pod sclerenchyma-specific lignin biosynthesis gene, has...
7.
Petereit J, Bayer P, Thomas W, Fernandez C, Amas J, Zhang Y, et al.
Plants (Basel)
. 2022 Aug;
11(15).
PMID: 35956427
During crop domestication and breeding, wild plant species have been shaped into modern high-yield crops and adapted to the main agro-ecological regions. However, climate change will impact crop productivity in...
8.
Fernandez C, Marsh J, Nestor B, Gill M, Golicz A, Bayer P, et al.
Methods Mol Biol
. 2022 Jul;
2512:73-80.
PMID: 35818000
Presence-absence variants (PAV) are genomic regions present in some individuals of a species, but not others. PAVs have been shown to contribute to genomic diversity, especially in bacteria and plants....
9.
Upadhyaya S, Bayer P, Fernandez C, Petereit J, Batley J, Bennamoun M, et al.
Plants (Basel)
. 2022 Jun;
11(12).
PMID: 35736770
Gene models are regions of the genome that can be transcribed into RNA and translated to proteins, or belong to a class of non-coding RNA genes. The prediction of gene...
10.
Fernandez C, Nestor B, Danilevicz M, Marsh J, Petereit J, Bayer P, et al.
Int J Mol Sci
. 2022 Feb;
23(4).
PMID: 35216392
Pangenomes aim to represent the complete repertoire of the genome diversity present within a species or cohort of species, capturing the genomic structural variance between individuals. This genomic information coupled...