Brian D OConnor
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Explore the profile of Brian D OConnor including associated specialties, affiliations and a list of published articles.
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Articles
22
Citations
1040
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Recent Articles
1.
Grossman R, Boyles R, Davis-Dusenbery B, Haddock A, Heath A, OConnor B, et al.
Sci Data
. 2024 Feb;
11(1):241.
PMID: 38409183
No abstract available.
2.
Schatz M, Philippakis A, Afgan E, Banks E, Carey V, Carroll R, et al.
Cell Genom
. 2022 Feb;
2(1).
PMID: 35199087
The NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL; https://anvilproject.org) was developed to address a widespread community need for a unified computing environment for genomics data storage, management,...
3.
Rehm H, Page A, Smith L, Adams J, Alterovitz G, Babb L, et al.
Cell Genom
. 2022 Jan;
1(2).
PMID: 35072136
The Global Alliance for Genomics and Health (GA4GH) aims to accelerate biomedical advances by enabling the responsible sharing of clinical and genomic data through both harmonized data aggregation and federated...
4.
Reversade B, Escande-Beillard N, Dimopoulou A, Fischer B, Chng S, Li Y, et al.
Nat Genet
. 2022 Jan;
54(2):213.
PMID: 35064218
No abstract available.
5.
Yuen D, Cabansay L, Duncan A, Luu G, Hogue G, Overbeck C, et al.
Nucleic Acids Res
. 2021 May;
49(W1):W624-W632.
PMID: 33978761
Dockstore (https://dockstore.org/) is an open source platform for publishing, sharing, and finding bioinformatics tools and workflows. The platform has facilitated large-scale biomedical research collaborations by using cloud technologies to increase...
6.
Goldman M, Zhang J, Fonseca N, Cortes-Ciriano I, Xiang Q, Craft B, et al.
Nat Commun
. 2020 Jul;
11(1):3400.
PMID: 32636365
The Pan-Cancer Analysis of Whole Genomes (PCAWG) project generated a vast amount of whole-genome cancer sequencing resource data. Here, as part of the ICGC/TCGA Pan-Cancer Analysis of Whole Genomes (PCAWG)...
7.
Ahmed A, Mpangase P, Panji S, Baichoo S, Souilmi Y, Fadlelmola F, et al.
AAS Open Res
. 2020 May;
1:9.
PMID: 32382696
The need for portable and reproducible genomics analysis pipelines is growing globally as well as in Africa, especially with the growth of collaborative projects like the Human Health and Heredity...
8.
Baichoo S, Souilmi Y, Panji S, Botha G, Meintjes A, Hazelhurst S, et al.
BMC Bioinformatics
. 2018 Nov;
19(1):457.
PMID: 30486782
Background: The Pan-African bioinformatics network, H3ABioNet, comprises 27 research institutions in 17 African countries. H3ABioNet is part of the Human Health and Heredity in Africa program (H3Africa), an African-led research...
9.
Correction: U87MG Decoded: The Genomic Sequence of a Cytogenetically Aberrant Human Cancer Cell Line
Clark M, Homer N, OConnor B, Chen Z, Eskin A, Lee H, et al.
PLoS Genet
. 2018 May;
14(5):e1007392.
PMID: 29768410
[This corrects the article DOI: 10.1371/journal.pgen.1000832.].
10.
OConnor B, Yuen D, Chung V, Duncan A, Liu X, Patricia J, et al.
F1000Res
. 2017 Mar;
6:52.
PMID: 28344774
As genomic datasets continue to grow, the feasibility of downloading data to a local organization and running analysis on a traditional compute environment is becoming increasingly problematic. Current large-scale projects,...