Benjamin Cole
Overview
Explore the profile of Benjamin Cole including associated specialties, affiliations and a list of published articles.
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Articles
16
Citations
301
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0
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Recent Articles
1.
Kapoor M, Ventura E, Walsh A, Sokolov A, George N, Kumari S, et al.
Front Genet
. 2024 Dec;
15:1460351.
PMID: 39678381
Introduction: The agriculture genomics community has numerous data submission standards available, but the standards for describing and storing single-cell (SC, e.g., scRNA- seq) data are comparatively underdeveloped. Methods: To bridge...
2.
Martinez-Vasallo C, Cole B, Perez-Alemany J, Ortiz-Ramirez C, Gallego-Bartolome J, Chory J, et al.
Proc Natl Acad Sci U S A
. 2024 Jul;
121(30):e2315778121.
PMID: 39012827
For plants adapted to bright light, a decrease in the amount of light received can be detrimental to their growth and survival. Consequently, in response to shade from surrounding vegetation,...
3.
Serrano K, Bezrutczyk M, Goudeau D, Dao T, OMalley R, Malmstrom R, et al.
Nat Plants
. 2024 Apr;
10(4):673-688.
PMID: 38589485
The symbiotic interaction of plants with arbuscular mycorrhizal (AM) fungi is ancient and widespread. Plants provide AM fungi with carbon in exchange for nutrients and water, making this interaction a...
4.
Grones C, Eekhout T, Shi D, Neumann M, Berg L, Ke Y, et al.
Plant Cell
. 2024 Jan;
36(4):812-828.
PMID: 38231860
Single-cell and single-nucleus RNA-sequencing technologies capture the expression of plant genes at an unprecedented resolution. Therefore, these technologies are gaining traction in plant molecular and developmental biology for elucidating the...
5.
Zhu J, Lolle S, Tang A, Guel B, Kvitko B, Cole B, et al.
Cell Rep
. 2023 Jun;
42(7):112676.
PMID: 37342910
Plant response to pathogen infection varies within a leaf, yet this heterogeneity is not well resolved. We expose Arabidopsis to Pseudomonas syringae or mock treatment and profile >11,000 individual cells...
6.
Martinez-Vasallo C, Cole B, Gallego-Bartolome J, Chory J, Kay S, Nohales M
bioRxiv
. 2023 Mar;
PMID: 36993677
For plants adapted to bright light, a decrease in the amount of light received can be detrimental to their growth and survival. Consequently, in response to shade from surrounding vegetation,...
7.
Fahlgren N, Kapoor M, Yordanova G, Papatheodorou I, Waese J, Cole B, et al.
Plant Physiol
. 2022 Oct;
191(1):35-46.
PMID: 36200899
We review how a data infrastructure for the Plant Cell Atlas might be built using existing infrastructure and platforms. The Human Cell Atlas has developed an extensive infrastructure for human...
8.
Rice S, Lazarus E, Anderton C, Birnbaum K, Brophy J, Cole B, et al.
Plant Direct
. 2022 Jul;
6(6):e406.
PMID: 35774620
The Plant Cell Atlas (PCA) community hosted a virtual symposium on December 9 and 10, 2021 on single cell and spatial omics technologies. The conference gathered almost 500 academic, industry,...
9.
Gao C, Courty P, Varoquaux N, Cole B, Montoya L, Xu L, et al.
Mol Ecol
. 2022 Jan;
32(10):2674-2687.
PMID: 35000239
The shifts in adaptive strategies revealed by ecological succession and the mechanisms that facilitate these shifts are fundamental to ecology. These adaptive strategies could be particularly important in communities of...
10.
Hawkins C, Ginzburg D, Zhao K, Dwyer W, Xue B, Xu A, et al.
J Integr Plant Biol
. 2021 Aug;
63(11):1888-1905.
PMID: 34403192
To understand and engineer plant metabolism, we need a comprehensive and accurate annotation of all metabolic information across plant species. As a step towards this goal, we generated genome-scale metabolic...