Arvind Ramanathan
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Explore the profile of Arvind Ramanathan including associated specialties, affiliations and a list of published articles.
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Articles
122
Citations
4134
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Recent Articles
1.
Prince J, Shetty P, Ramanathan A, N S
ScientificWorldJournal
. 2025 Feb;
2025:9595176.
PMID: 39963652
Multiple surgical approaches exist to access the infraorbital region to treat fractures. As with facial approaches, the onus is on good esthetics at the end of the procedure. Access is...
2.
Gupta A, Ma H, Ramanathan A, Zerze G
J Chem Theory Comput
. 2024 Oct;
20(20):9178-9189.
PMID: 39374435
The folding and unfolding of RNA stem-loops are critical biological processes; however, their computational studies are often hampered by the ruggedness of their folding landscape, necessitating long simulation times at...
3.
Torta F, Hoffmann N, Burla B, Alecu I, Arita M, Bamba T, et al.
Nat Commun
. 2024 Oct;
15(1):8562.
PMID: 39362843
In this community effort, we compare measurements between 34 laboratories from 19 countries, utilizing mixtures of labelled authentic synthetic standards, to quantify by mass spectrometry four clinically used ceramide species...
4.
Leung J, Frazee N, Brace A, Ramanathan A, Chong L
bioRxiv
. 2024 Sep;
PMID: 39257807
Our method identifies outliers in a latent space model of the system's sampled conformations that is periodically trained using a convolutional variational autoencoder. As a proof of principle, we applied...
5.
Pundlik S, Barik A, Venkateshvaran A, Sahoo S, Jaysingh M, Math R, et al.
Elife
. 2024 Aug;
13.
PMID: 39196610
Senescent cells are characterized by multiple features such as increased expression of senescence-associated β-galactosidase activity (SA β-gal) and cell cycle inhibitors such as p21 or p16. They accumulate with tissue...
6.
Manubens-Gil L, Zhou Z, Chen H, Ramanathan A, Liu X, Liu Y, et al.
Nat Methods
. 2024 Aug;
21(10):1959.
PMID: 39090383
No abstract available.
7.
Dey P, Rajalaxmi S, Saha P, Thakur P, Hashmi M, Lal H, et al.
Commun Biol
. 2024 Apr;
7(1):515.
PMID: 38688991
Adaptation to hypothermia is important for skeletal muscle cells under physiological stress and is used for therapeutic hypothermia (mild hypothermia at 32 °C). We show that hypothermic preconditioning at 32 ...
8.
Casalino L, Dommer A, Gaieb Z, Barros E, Sztain T, Ahn S, et al.
Int J High Perform Comput Appl
. 2024 Apr;
35(5):432-451.
PMID: 38603008
We develop a generalizable AI-driven workflow that leverages heterogeneous HPC resources to explore the time-dependent dynamics of molecular systems. We use this workflow to investigate the mechanisms of infectivity of...
9.
Trifan A, Gorgun D, Salim M, Li Z, Brace A, Zvyagin M, et al.
Int J High Perform Comput Appl
. 2024 Mar;
36(5-6):603-623.
PMID: 38464362
The severe acute respiratory syndrome coronavirus-2 (SARS-CoV-2) replication transcription complex (RTC) is a multi-domain protein responsible for replicating and transcribing the viral mRNA inside a human cell. Attacking RTC function...
10.
Kim Y, Maltseva N, Tesar C, Jedrzejczak R, Endres M, Ma H, et al.
iScience
. 2024 Feb;
27(2):108976.
PMID: 38327783
Coronavirus nucleocapsid protein (NP) of SARS-CoV-2 plays a central role in many functions important for virus proliferation including packaging and protecting genomic RNA. The protein shares sequence, structure, and architecture...