Information Processing by RNA Polymerase: Recognition of Regulatory Signals During RNA Chain Elongation

Overview

Journal J Bacteriol

Publisher American Society for Microbiology

Specialty Microbiology

Date 1998 Jun 27

PMID 9642176

Citations 51

Authors

R A Mooney

I Artsimovitch

R Landick

Affiliations

Soon will be listed here.

Citing Articles

The Role of RNA Secondary Structure in Regulation of Gene Expression in Bacteria.

Chelkowska-Pauszek A, Kosinski J, Marciniak K, Wysocka M, Bakowska-Zywicka K, Zywicki M Int J Mol Sci. 2021; 22(15).

PMID: 34360611 PMC: 8346122. DOI: 10.3390/ijms22157845.

Exploiting phage strategies to modulate bacterial transcription.

Wahl M, Sen R Transcription. 2019; 10(4-5):222-230.

PMID: 31663818 PMC: 6948966. DOI: 10.1080/21541264.2019.1684137.

Mimicking Co-Transcriptional RNA Folding Using a Superhelicase.

Hua B, Panja S, Wang Y, Woodson S, Ha T J Am Chem Soc. 2018; 140(32):10067-10070.

PMID: 30063835 PMC: 6169520. DOI: 10.1021/jacs.8b03784.

Will biologists become computer scientists? A truly interdisciplinary effort by computer scientists and biologists to understand how cells process information may yield new insights for both fields.

Condon A, Kirchner H, Lariviere D, Marshall W, Noireaux V, Tlusty T EMBO Rep. 2018; 19(9).

PMID: 30061101 PMC: 6123653. DOI: 10.15252/embr.201846628.

Co-Transcriptional Folding and Regulation Mechanisms of Riboswitches.

Gong S, Wang Y, Wang Z, Zhang W Molecules. 2017; 22(7).

PMID: 28703767 PMC: 6152003. DOI: 10.3390/molecules22071169.

References

Suh W, Ross W, Record Jr M . Two open complexes and a requirement for Mg2+ to open the lambda PR transcription start site. Science. 1993; 259(5093):358-61. DOI: 10.1126/science.8420002. View

Lee D, Feng G, Landick R . GreA-induced transcript cleavage is accompanied by reverse translocation to a different transcription complex conformation. J Biol Chem. 1994; 269(35):22295-303. View

Liu K, Zhang Y, Severinov K, Das A, Hanna M . Role of Escherichia coli RNA polymerase alpha subunit in modulation of pausing, termination and anti-termination by the transcription elongation factor NusA. EMBO J. 1996; 15(1):150-61. PMC: 449927. View

Young R . RNA polymerase II. Annu Rev Biochem. 1991; 60:689-715. DOI: 10.1146/annurev.bi.60.070191.003353. View

EICHHORN G, Chuknyisky P, Butzow J, Beal R, Garland C, Janzen C . A structural model for fidelity in transcription. Proc Natl Acad Sci U S A. 1994; 91(16):7613-7. PMC: 44452. DOI: 10.1073/pnas.91.16.7613. View

Archambault J, Friesen J . Genetics of eukaryotic RNA polymerases I, II, and III. Microbiol Rev. 1993; 57(3):703-24. PMC: 372932. DOI: 10.1128/mr.57.3.703-724.1993. View

Zaychikov E, Martin E, Denissova L, Kozlov M, Markovtsov V, Kashlev M . Mapping of catalytic residues in the RNA polymerase active center. Science. 1996; 273(5271):107-9. DOI: 10.1126/science.273.5271.107. View

Erie D, Yager T, von Hippel P . The single-nucleotide addition cycle in transcription: a biophysical and biochemical perspective. Annu Rev Biophys Biomol Struct. 1992; 21:379-415. DOI: 10.1146/annurev.bb.21.060192.002115. View

Mustaev A, Kozlov M, Markovtsov V, Zaychikov E, Denissova L, Goldfarb A . Modular organization of the catalytic center of RNA polymerase. Proc Natl Acad Sci U S A. 1997; 94(13):6641-5. PMC: 21211. DOI: 10.1073/pnas.94.13.6641. View

10.

Komissarova N, Kashlev M . RNA polymerase switches between inactivated and activated states By translocating back and forth along the DNA and the RNA. J Biol Chem. 1997; 272(24):15329-38. DOI: 10.1074/jbc.272.24.15329. View

11.

Richardson J . Transcription termination. Crit Rev Biochem Mol Biol. 1993; 28(1):1-30. DOI: 10.3109/10409239309082571. View

12.

DONAHUE J, Turnbough Jr C . Nucleotide-specific transcriptional pausing in the pyrBI leader region of Escherichia coli K-12. J Biol Chem. 1994; 269(27):18185-91. View

13.

Li M, McClure W, Susskind M . Changing the mechanism of transcriptional activation by phage lambda repressor. Proc Natl Acad Sci U S A. 1997; 94(8):3691-6. PMC: 20502. DOI: 10.1073/pnas.94.8.3691. View

14.

Landick R, Yanofsky C . Isolation and structural analysis of the Escherichia coli trp leader paused transcription complex. J Mol Biol. 1987; 196(2):363-77. DOI: 10.1016/0022-2836(87)90697-8. View

15.

deHaseth P, Zupancic M, Record Jr M . RNA polymerase-promoter interactions: the comings and goings of RNA polymerase. J Bacteriol. 1998; 180(12):3019-25. PMC: 107799. DOI: 10.1128/JB.180.12.3019-3025.1998. View

16.

Farnham P, Platt T . A model for transcription termination suggested by studies on the trp attenuator in vitro using base analogs. Cell. 1980; 20(3):739-48. DOI: 10.1016/0092-8674(80)90320-7. View

17.

Rice G, Kane C, CHAMBERLIN M . Footprinting analysis of mammalian RNA polymerase II along its transcript: an alternative view of transcription elongation. Proc Natl Acad Sci U S A. 1991; 88(10):4245-9. PMC: 51635. DOI: 10.1073/pnas.88.10.4245. View

18.

Wang D, Landick R . Nuclease cleavage of the upstream half of the nontemplate strand DNA in an Escherichia coli transcription elongation complex causes upstream translocation and transcriptional arrest. J Biol Chem. 1997; 272(9):5989-94. DOI: 10.1074/jbc.272.9.5989. View

19.

McClure W . Mechanism and control of transcription initiation in prokaryotes. Annu Rev Biochem. 1985; 54:171-204. DOI: 10.1146/annurev.bi.54.070185.001131. View

20.

GREENBLATT J, Nodwell J, MASON S . Transcriptional antitermination. Nature. 1993; 364(6436):401-6. DOI: 10.1038/364401a0. View