McGehee J, Stathopoulos A
Development. 2024; 151(21).
PMID: 39397716
PMC: 11574349.
DOI: 10.1242/dev.202775.
McGehee J, Stathopoulos A
Front Cell Dev Biol. 2024; 12:1436369.
PMID: 39161589
PMC: 11330768.
DOI: 10.3389/fcell.2024.1436369.
McGehee J, Stathopoulos A
bioRxiv. 2024; .
PMID: 38826476
PMC: 11142056.
DOI: 10.1101/2024.05.20.595009.
Brennan K, Weilert M, Krueger S, Pampari A, Liu H, Yang A
Dev Cell. 2023; 58(19):1898-1916.e9.
PMID: 37557175
PMC: 10592203.
DOI: 10.1016/j.devcel.2023.07.007.
Lusk J, Chua E, Kaur P, Sung I, Lim W, Lam V
Sci Rep. 2022; 12(1):7684.
PMID: 35538124
PMC: 9090920.
DOI: 10.1038/s41598-022-11699-3.
Deciphering enhancer sequence using thermodynamics-based models and convolutional neural networks.
Dibaeinia P, Sinha S
Nucleic Acids Res. 2021; 49(18):10309-10327.
PMID: 34508359
PMC: 8501998.
DOI: 10.1093/nar/gkab765.
Insect Transcription Factors: A Landscape of Their Structures and Biological Functions in and beyond.
Guo Z, Qin J, Zhou X, Zhang Y
Int J Mol Sci. 2018; 19(11).
PMID: 30469390
PMC: 6274879.
DOI: 10.3390/ijms19113691.
The myogenic repressor gene Holes in muscles is a direct transcriptional target of Twist and Tinman in the Drosophila embryonic mesoderm.
Elwell J, Lovato T, Adams M, Baca E, Lee T, M Cripps R
Dev Biol. 2015; 400(2):266-76.
PMID: 25704510
PMC: 4385497.
DOI: 10.1016/j.ydbio.2015.02.005.
Shadow enhancers enable Hunchback bifunctionality in the Drosophila embryo.
Staller M, Vincent B, Bragdon M, Lydiard-Martin T, Wunderlich Z, Estrada J
Proc Natl Acad Sci U S A. 2015; 112(3):785-90.
PMID: 25564665
PMC: 4311800.
DOI: 10.1073/pnas.1413877112.
TOPLESS mediates brassinosteroid-induced transcriptional repression through interaction with BZR1.
Oh E, Zhu J, Ryu H, Hwang I, Wang Z
Nat Commun. 2014; 5:4140.
PMID: 24938363
PMC: 4232713.
DOI: 10.1038/ncomms5140.
TWIST1 associates with NF-κB subunit RELA via carboxyl-terminal WR domain to promote cell autonomous invasion through IL8 production.
Li S, Kendall S, Raices R, Finlay J, Covarrubias M, Liu Z
BMC Biol. 2012; 10:73.
PMID: 22891766
PMC: 3482588.
DOI: 10.1186/1741-7007-10-73.
Akirin links twist-regulated transcription with the Brahma chromatin remodeling complex during embryogenesis.
Nowak S, Aihara H, Gonzalez K, Nibu Y, Baylies M
PLoS Genet. 2012; 8(3):e1002547.
PMID: 22396663
PMC: 3291577.
DOI: 10.1371/journal.pgen.1002547.
A biophysical model for analysis of transcription factor interaction and binding site arrangement from genome-wide binding data.
He X, Chen C, Hong F, Fang F, Sinha S, Ng H
PLoS One. 2009; 4(12):e8155.
PMID: 19956545
PMC: 2780727.
DOI: 10.1371/journal.pone.0008155.
Toward a systems-level understanding of developmental regulatory networks.
Busser B, Bulyk M, Michelson A
Curr Opin Genet Dev. 2008; 18(6):521-9.
PMID: 18848887
PMC: 2704888.
DOI: 10.1016/j.gde.2008.09.003.
Specificity of Atonal and Scute bHLH factors: analysis of cognate E box binding sites and the influence of Senseless.
Powell L, Deaton A, Wear M, Jarman A
Genes Cells. 2008; 13(9):915-29.
PMID: 18681894
PMC: 3287287.
DOI: 10.1111/j.1365-2443.2008.01217.x.
Upregulation of Twist-1 by NF-kappaB blocks cytotoxicity induced by chemotherapeutic drugs.
Pham C, Bubici C, Zazzeroni F, Knabb J, Papa S, Kuntzen C
Mol Cell Biol. 2007; 27(11):3920-35.
PMID: 17403902
PMC: 1900008.
DOI: 10.1128/MCB.01219-06.
A core transcriptional network for early mesoderm development in Drosophila melanogaster.
Sandmann T, Girardot C, Brehme M, Tongprasit W, Stolc V, Furlong E
Genes Dev. 2007; 21(4):436-49.
PMID: 17322403
PMC: 1804332.
DOI: 10.1101/gad.1509007.
The Dorsal Rel homology domain plays an active role in transcriptional regulation.
Jia S, Flores-Saaib R, Courey A
Mol Cell Biol. 2002; 22(14):5089-99.
PMID: 12077338
PMC: 139791.
DOI: 10.1128/MCB.22.14.5089-5099.2002.
Conjugation of Smt3 to dorsal may potentiate the Drosophila immune response.
Bhaskar V, Smith M, Courey A
Mol Cell Biol. 2002; 22(2):492-504.
PMID: 11756545
PMC: 139748.
DOI: 10.1128/MCB.22.2.492-504.2002.
The homeodomain of PDX-1 mediates multiple protein-protein interactions in the formation of a transcriptional activation complex on the insulin promoter.
Ohneda K, Mirmira R, Wang J, Johnson J, German M
Mol Cell Biol. 2000; 20(3):900-11.
PMID: 10629047
PMC: 85207.
DOI: 10.1128/MCB.20.3.900-911.2000.