Schneider T
PLoS One. 2023; 18(1):e0279758.
PMID: 36626367
PMC: 9831307.
DOI: 10.1371/journal.pone.0279758.
Myers K, Place M, Kominek J, Noguera D, Donohue T
Microbiol Resour Announc. 2021; 10(15).
PMID: 33858925
PMC: 8050967.
DOI: 10.1128/MRA.00160-21.
Qian Z, Trostel A, Lewis D, Lee S, He X, Stringer A
Front Mol Biosci. 2016; 3:74.
PMID: 27900321
PMC: 5110547.
DOI: 10.3389/fmolb.2016.00074.
Caminsky N, Mucaki E, Rogan P
F1000Res. 2015; 3:282.
PMID: 25717368
PMC: 4329672.
DOI: 10.12688/f1000research.5654.1.
Schneider T, Mastronarde D
Discrete Appl Math. 2009; 71(1-3):259-268.
PMID: 19953199
PMC: 2785095.
DOI: 10.1016/S0166-218X(96)00068-6.
Multiple splice defects in ABCA1 cause low HDL-C in a family with hypoalphalipoproteinemia and premature coronary disease.
Rhyne J, Mantaring M, Gardner D, Miller M
BMC Med Genet. 2009; 10:1.
PMID: 19133158
PMC: 2642808.
DOI: 10.1186/1471-2350-10-1.
Small membrane proteins found by comparative genomics and ribosome binding site models.
Hemm M, Paul B, Schneider T, Storz G, Rudd K
Mol Microbiol. 2009; 70(6):1487-501.
PMID: 19121005
PMC: 2614699.
DOI: 10.1111/j.1365-2958.2008.06495.x.
Twenty Years of Delila and Molecular Information Theory: The Altenberg-Austin Workshop in Theoretical Biology Biological Information, Beyond Metaphor: Causality, Explanation, and Unification Altenberg, Austria, 11-14 July 2002.
Schneider T
Biol Theory. 2007; 1(3):250-260.
PMID: 18084638
PMC: 2139980.
DOI: 10.1162/biot.2006.1.3.250.
WebLogo: a sequence logo generator.
Crooks G, Hon G, Chandonia J, Brenner S
Genome Res. 2004; 14(6):1188-90.
PMID: 15173120
PMC: 419797.
DOI: 10.1101/gr.849004.
Molecular flip-flops formed by overlapping Fis sites.
Hengen P, Lyakhov I, Stewart L, Schneider T
Nucleic Acids Res. 2003; 31(22):6663-73.
PMID: 14602927
PMC: 275571.
DOI: 10.1093/nar/gkg877.
Genome-wide prediction, display and refinement of binding sites with information theory-based models.
Gadiraju S, Vyhlidal C, Leeder J, Rogan P
BMC Bioinformatics. 2003; 4:38.
PMID: 12962546
PMC: 200970.
DOI: 10.1186/1471-2105-4-38.
Strong minor groove base conservation in sequence logos implies DNA distortion or base flipping during replication and transcription initiation.
Schneider T
Nucleic Acids Res. 2001; 29(23):4881-91.
PMID: 11726698
PMC: 96701.
DOI: 10.1093/nar/29.23.4881.
Information analysis of Fis binding sites.
Hengen P, Bartram S, Stewart L, Schneider T
Nucleic Acids Res. 1998; 25(24):4994-5002.
PMID: 9396807
PMC: 147151.
DOI: 10.1093/nar/25.24.4994.
Sequence walkers: a graphical method to display how binding proteins interact with DNA or RNA sequences.
Schneider T
Nucleic Acids Res. 1997; 25(21):4408-15.
PMID: 9336476
PMC: 147041.
DOI: 10.1093/nar/25.21.4408.
Feature expressions: creating and manipulating sequence datasets.
Fristensky B
Nucleic Acids Res. 1993; 21(25):5997-6003.
PMID: 8290362
PMC: 310486.
DOI: 10.1093/nar/21.25.5997.
Quantitative analysis of ribosome binding sites in E.coli.
Barrick D, Villanueba K, Childs J, Kalil R, Schneider T, Lawrence C
Nucleic Acids Res. 1994; 22(7):1287-95.
PMID: 8165145
PMC: 523655.
DOI: 10.1093/nar/22.7.1287.
Delila system tools.
Schneider T, Stormo G, Yarus M, Gold L
Nucleic Acids Res. 1984; 12(1 Pt 1):129-40.
PMID: 6694897
PMC: 320990.
DOI: 10.1093/nar/12.1part1.129.
The bacteriophage T4 regA gene: primary sequence of a translational repressor.
Trojanowska M, Miller E, KARAM J, Stormo G, Gold L
Nucleic Acids Res. 1984; 12(15):5979-93.
PMID: 6473098
PMC: 320051.
DOI: 10.1093/nar/12.15.5979.
Sequence of the C. elegans transposable element Tc1.
Rosenzweig B, Liao L, Hirsh D
Nucleic Acids Res. 1983; 11(12):4201-9.
PMID: 6306578
PMC: 326035.
DOI: 10.1093/nar/11.12.4201.
Data structures for DNA sequence manipulation.
Lawrence C
Nucleic Acids Res. 1986; 14(1):205-16.
PMID: 3753765
PMC: 339377.
DOI: 10.1093/nar/14.1.205.