Nucleotide Sequence and Thermal Property of 5S RRNA from the Elder Aphid. Acyrthosiphon Magnoliae

Overview

Journal Nucleic Acids Res

Publisher Oxford University Press

Specialty Biochemistry

Date 1982 Mar 25

PMID 6804932

Citations 7

Authors

Y Kawata

H Ishikawa

Affiliations

Soon will be listed here.

Abstract

The nucleotide sequence of 5S rRNA from the elder aphid. Acyrthosiphon magnoliae was determined by using postlabeling sequencing techniques. The aphid 5S rRNA consists of 120 nucleotides and the sequence differs from those of Bombyx and Drosophila 5S rRNAs in 14 and 16 positions, respectively. A secondary structure model based on the sequence has two distinctive features : the helix I is shorter and the total free energy lower. Judging from the thermal profile, the aphid 5S rRNA likely assumes a conformation somewhat different from those of the other two insects.

Citing Articles

Generalized structures of the 5S ribosomal RNAs.

Delihas N, Andersen J Nucleic Acids Res. 1982; 10(22):7323-44.

PMID: 7155895 PMC: 327007. DOI: 10.1093/nar/10.22.7323.

Collection of published 5S and 5.8S ribosomal RNA sequences.

Erdmann V, Huysmans E, Vandenberghe A, De Wachter R Nucleic Acids Res. 1983; 11(1):r105-33.

PMID: 6866760 PMC: 325704.

Nucleotide sequences of 5s rRNAs from sponge Halichondria japonica and tunicate Halocynthia roretzi and their phylogenetic positions.

Komiya H, Hasegawa M, Takemura S Nucleic Acids Res. 1983; 11(7):1969-74.

PMID: 6835845 PMC: 325854. DOI: 10.1093/nar/11.7.1969.

Primary and secondary structures of Tetrahymena and aphid 5.8S rRNAs: structural features of 5.8S rRNA which interacts with the 28S rRNA containing the hidden break.

Fujiwara H, Ishikawa H Nucleic Acids Res. 1982; 10(17):5173-82.

PMID: 6815618 PMC: 320863. DOI: 10.1093/nar/10.17.5173.

Collection of published 5S and 5.8S ribosomal RNA sequences.

Erdmann V, Wolters J, Huysmans E, Vandenberghe A, De Wachter R Nucleic Acids Res. 1984; 12 Suppl:r133-66.

PMID: 6728686 PMC: 320007. DOI: 10.1093/nar/12.suppl.r133.

References

Peacock A, DINGMAN C . Resolution of multiple ribonucleic acid species by polyacrylamide gel electrophoresis. Biochemistry. 1967; 6(6):1818-27. DOI: 10.1021/bi00858a033. View

Ishikawa H, NEWBURGH R . Studies of the thermal conversion of 28 S RNA of Galleria mellonella (L.) to an 18 S product. J Mol Biol. 1972; 64(1):135-44. DOI: 10.1016/0022-2836(72)90325-7. View

Tinoco Jr I, Borer P, Dengler B, Levin M, Uhlenbeck O, Crothers D . Improved estimation of secondary structure in ribonucleic acids. Nat New Biol. 1973; 246(150):40-1. DOI: 10.1038/newbio246040a0. View

Benhamou J, Jordan B . Nucleotide sequence of Drosophila melanogaster 5S RNA: evidence for a general 5S RNA model. FEBS Lett. 1976; 62(2):146-9. DOI: 10.1016/0014-5793(76)80039-7. View

Ishikawa H . Arthropod ribosomes. Integrity of ribosomal ribonucleic acids from aphids and water fleas. Biochim Biophys Acta. 1976; 435(3):258-68. DOI: 10.1016/0005-2787(76)90107-6. View

Erdmann V . Structure and function of 5S and 5.8 S RNA. Prog Nucleic Acid Res Mol Biol. 1976; 18:45-90. View

Donis-Keller H, Maxam A, Gilbert W . Mapping adenines, guanines, and pyrimidines in RNA. Nucleic Acids Res. 1977; 4(8):2527-38. PMC: 342589. DOI: 10.1093/nar/4.8.2527. View

Lockard R, Heckman J, MACGEE J, Tabor M, RajBhandary U . Sequence analysis of 5'[32P] labeled mRNA and tRNA using polyacrylamide gel electrophoresis. Nucleic Acids Res. 1978; 5(1):37-56. PMC: 341960. DOI: 10.1093/nar/5.1.37. View

Stanley J, VASSILENKO S . A different approach to RNA sequencing. Nature. 1978; 274(5666):87-9. DOI: 10.1038/274087a0. View

10.

Semler B, Perrault J, Abelson J, Holland J . Sequence of a RNA templated by the 3'-OH RNA terminus of defective interfering particles of vesicular stomatitis virus. Proc Natl Acad Sci U S A. 1978; 75(10):4704-8. PMC: 336188. DOI: 10.1073/pnas.75.10.4704. View

11.

Peattie D . Direct chemical method for sequencing RNA. Proc Natl Acad Sci U S A. 1979; 76(4):1760-4. PMC: 383470. DOI: 10.1073/pnas.76.4.1760. View

12.

Kuchino Y, Kato M, Sugisaki H, Nishimura S . Nucleotide sequence of starfish initiator tRNA. Nucleic Acids Res. 1979; 6(11):3459-69. PMC: 327948. DOI: 10.1093/nar/6.11.3459. View

13.

Appel B, Erdmann V, Stulz J, Ackerman T . Determination of base pairing in Escherichia coli and Bacillus stearothermophilus 5S RNAs by infrared spectroscopy. Nucleic Acids Res. 1979; 7(4):1043-57. PMC: 342281. DOI: 10.1093/nar/7.4.1043. View

14.

Erdmann V . Collection of published 5S and 5.8S RNA sequences and their precursors. Nucleic Acids Res. 1981; 9(1):r25-42. PMC: 326681. DOI: 10.1093/nar/9.1.213-a. View

15.

Komiya H, Kawakami M, Shimizu N, Takemura S . Nucleotide sequences and evolutional aspect of 5S ribosomal RNAs from Lingula and silkworm. Nucleic Acids Symp Ser. 1980; (8):s119-22. View

16.

Diels L, De Baere R, Vandenberghe A, De Wachter R . The sequence of 5S ribosomal RNA of the crustacean Artemia salina. Nucleic Acids Res. 1981; 9(19):5141-4. PMC: 327504. DOI: 10.1093/nar/9.19.5141. View

17.

Kumagai I, Digweed M, Erdmann V, Watanabe K, Oshima T . The nucleotide sequence of 5S rRNA from an extreme thermophile, Thermus thermophilus HB8. Nucleic Acids Res. 1981; 9(19):5159-62. PMC: 327506. DOI: 10.1093/nar/9.19.5159. View