Nagae T, Takeda M, Noji T, Saito K, Aoyama H, Miyanoiri Y
Proc Natl Acad Sci U S A. 2024; 121(36):e2404472121.
PMID: 39190358
PMC: 11388336.
DOI: 10.1073/pnas.2404472121.
Noji T, Chiba Y, Saito K, Ishikita H
Biochemistry. 2024; 63(11):1505-1512.
PMID: 38745402
PMC: 11155677.
DOI: 10.1021/acs.biochem.4c00182.
Ghosh A, Niland C, Cahill S, Karadkhelkar N, Schramm V
J Am Chem Soc. 2021; 143(43):18325-18330.
PMID: 34668717
PMC: 9228670.
DOI: 10.1021/jacs.1c09328.
Hiller D, Dunican B, Nallur S, Li N, Piccirilli J, Strobel S
Biochemistry. 2020; 59(17):1665-1671.
PMID: 32320214
PMC: 7260706.
DOI: 10.1021/acs.biochem.9b01047.
Parvez S, Long M, Poganik J, Aye Y
Chem Rev. 2018; 118(18):8798-8888.
PMID: 30148624
PMC: 6158072.
DOI: 10.1021/acs.chemrev.7b00698.
Benchmarking pK prediction methods for Lys115 in acetoacetate decarboxylase.
Liu Y, Patel A, Burger S, Ayers P
J Mol Model. 2017; 23(5):155.
PMID: 28382418
DOI: 10.1007/s00894-017-3324-x.
Transition State Charge Stabilization and Acid-Base Catalysis of mRNA Cleavage by the Endoribonuclease RelE.
Dunican B, Hiller D, Strobel S
Biochemistry. 2015; 54(47):7048-57.
PMID: 26535789
PMC: 4666806.
DOI: 10.1021/acs.biochem.5b00866.
Proton transfer reactions and hydrogen-bond networks in protein environments.
Ishikita H, Saito K
J R Soc Interface. 2013; 11(91):20130518.
PMID: 24284891
PMC: 3869154.
DOI: 10.1098/rsif.2013.0518.
Uncovering the determinants of a highly perturbed tyrosine pKa in the active site of ketosteroid isomerase.
Schwans J, Sunden F, Gonzalez A, Tsai Y, Herschlag D
Biochemistry. 2013; 52(44):7840-55.
PMID: 24151972
PMC: 3890242.
DOI: 10.1021/bi401083b.
Structural and functional characterization of MppR, an enduracididine biosynthetic enzyme from streptomyces hygroscopicus: functional diversity in the acetoacetate decarboxylase-like superfamily.
Burroughs A, Hoppe R, Goebel N, Sayyed B, Voegtline T, Schwabacher A
Biochemistry. 2013; 52(26):4492-506.
PMID: 23758195
PMC: 3743547.
DOI: 10.1021/bi400397k.
Catalytic control of enzymatic fluorine specificity.
Weeks A, Chang M
Proc Natl Acad Sci U S A. 2012; 109(48):19667-72.
PMID: 23150553
PMC: 3511759.
DOI: 10.1073/pnas.1212591109.
Flavivirus RNA cap methyltransferase: structure, function, and inhibition.
Liu L, Dong H, Chen H, Zhang J, Ling H, Li Z
Front Biol (Beijing). 2011; 5(4):286-303.
PMID: 21927615
PMC: 3172701.
DOI: 10.1007/s11515-010-0660-y.
Bovine pancreatic ribonuclease: fifty years of the first enzymatic reaction mechanism.
Cuchillo C, Nogues M, Raines R
Biochemistry. 2011; 50(37):7835-41.
PMID: 21838247
PMC: 3172371.
DOI: 10.1021/bi201075b.
Mass spectral characterization of organophosphate-labeled, tyrosine-containing peptides: characteristic mass fragments and a new binding motif for organophosphates.
Schopfer L, Grigoryan H, Li B, Nachon F, Masson P, Lockridge O
J Chromatogr B Analyt Technol Biomed Life Sci. 2009; 878(17-18):1297-311.
PMID: 19762289
PMC: 2860652.
DOI: 10.1016/j.jchromb.2009.07.026.
The far reaches of enzymology.
Zalatan J, Herschlag D
Nat Chem Biol. 2009; 5(8):516-20.
PMID: 19620986
DOI: 10.1038/nchembio0809-516.
Acetoacetate decarboxylase: hydrophobics, not electrostatics.
Gerlt J
Nat Chem Biol. 2009; 5(7):454-5.
PMID: 19536104
DOI: 10.1038/nchembio0709-454.
The origin of the electrostatic perturbation in acetoacetate decarboxylase.
Ho M, Menetret J, Tsuruta H, Allen K
Nature. 2009; 459(7245):393-7.
PMID: 19458715
DOI: 10.1038/nature07938.
On the molecular mechanisms of the Schiff base deprotonation during the bacteriorhodopsin photocycle.
Chronister E, Corcoran T, Song L, El-Sayed M
Proc Natl Acad Sci U S A. 1986; 83(22):8580-4.
PMID: 16578793
PMC: 386974.
DOI: 10.1073/pnas.83.22.8580.
Butanol-Ethanol Dehydrogenase and Butanol-Ethanol-Isopropanol Dehydrogenase: Different Alcohol Dehydrogenases in Two Strains of Clostridium beijerinckii (Clostridium butylicum).
Hiu S, Zhu C, Yan R, Chen J
Appl Environ Microbiol. 1987; 53(4):697-703.
PMID: 16347317
PMC: 203739.
DOI: 10.1128/aem.53.4.697-703.1987.
Nonequilibration of membrane-associated protons with the internal aqueous space in dark-maintained chloroplast thylakoids.
Laszlo J, BAKER G, Dilley R
J Bioenerg Biomembr. 1984; 16(1):37-51.
PMID: 6100294
DOI: 10.1007/BF00744144.