Paradis N, Wu C
Virus Evol. 2024; 10(1):veae089.
PMID: 39584063
PMC: 11584280.
DOI: 10.1093/ve/veae089.
Moutinho A, Eyre-Walker A
Genome Biol Evol. 2023; 16(2).
PMID: 38149940
PMC: 10849182.
DOI: 10.1093/gbe/evad232.
Cope A, Shah P
PLoS Genet. 2022; 18(6):e1010256.
PMID: 35714134
PMC: 9246145.
DOI: 10.1371/journal.pgen.1010256.
Shmool T, Martin L, Clarke C, Bui-Le L, Polizzi K, Hallett J
Chem Sci. 2021; 12(1):196-209.
PMID: 34163590
PMC: 8178808.
DOI: 10.1039/d0sc04991c.
Forcelloni S, Giansanti A
J Mol Evol. 2019; 88(2):164-178.
PMID: 31820049
DOI: 10.1007/s00239-019-09921-4.
A genomic survey of transposable elements in the choanoflagellate reveals selection on codon usage.
Southworth J, Grace C, Marron A, Fatima N, Carr M
Mob DNA. 2019; 10:44.
PMID: 31788034
PMC: 6875170.
DOI: 10.1186/s13100-019-0189-9.
Patterns of Ancestral Animal Codon Usage Bias Revealed through Holozoan Protists.
Southworth J, Armitage P, Fallon B, Dawson H, Bryk J, Carr M
Mol Biol Evol. 2018; 35(10):2499-2511.
PMID: 30169693
PMC: 6188563.
DOI: 10.1093/molbev/msy157.
The Impact of Selection at the Amino Acid Level on the Usage of Synonymous Codons.
Blazej P, Mackiewicz D, Wnetrzak M, Mackiewicz P
G3 (Bethesda). 2017; 7(3):967-981.
PMID: 28122952
PMC: 5345726.
DOI: 10.1534/g3.116.038125.
Population genetics from 1966 to 2016.
Charlesworth B, Charlesworth D
Heredity (Edinb). 2016; 118(1):2-9.
PMID: 27460498
PMC: 5176116.
DOI: 10.1038/hdy.2016.55.
Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone.
Gilchrist M, Chen W, Shah P, Landerer C, Zaretzki R
Genome Biol Evol. 2015; 7(6):1559-79.
PMID: 25977456
PMC: 4494061.
DOI: 10.1093/gbe/evv087.
Characterization of a novel insect-specific flavivirus from Brazil: potential for inhibition of infection of arthropod cells with medically important flaviviruses.
Kenney J, Solberg O, Langevin S, Brault A
J Gen Virol. 2014; 95(Pt 12):2796-2808.
PMID: 25146007
PMC: 4582674.
DOI: 10.1099/vir.0.068031-0.
Unraveling patterns of site-to-site synonymous rates variation and associated gene properties of protein domains and families.
Dimitrieva S, Anisimova M
PLoS One. 2014; 9(6):e95034.
PMID: 24896293
PMC: 4045579.
DOI: 10.1371/journal.pone.0095034.
[The extent of asymmetric distribution of DNA-bases in genes].
Piechocki R, Berg W, Bergmann A
Theor Appl Genet. 2014; 49(6):265-71.
PMID: 24407415
DOI: 10.1007/BF00275131.
Variation in protein structure and function: Primate hemoglobins.
Sullivan B
J Mol Evol. 2013; 1(4):295-304.
PMID: 24173490
DOI: 10.1007/BF01653958.
Genome-wide patterns of codon bias are shaped by natural selection in the purple sea urchin, Strongylocentrotus purpuratus.
Kober K, Pogson G
G3 (Bethesda). 2013; 3(7):1069-83.
PMID: 23637123
PMC: 3704236.
DOI: 10.1534/g3.113.005769.
The Genetic Equidistance Result of Molecular Evolution is Independent of Mutation Rates.
Huang S
J Comput Sci Syst Biol. 2011; 1:92-102.
PMID: 21976921
PMC: 3184610.
DOI: 10.4172/jcsb.1000009.
Differential selection on gene translation efficiency between the filamentous fungus Ashbya gossypii and yeasts.
Jiang H, Zhang Y, Sun J, Wang W, Gu Z
BMC Evol Biol. 2008; 8:343.
PMID: 19111070
PMC: 2632675.
DOI: 10.1186/1471-2148-8-343.
Selectionism and neutralism in molecular evolution.
Nei M
Mol Biol Evol. 2005; 22(12):2318-42.
PMID: 16120807
PMC: 1513187.
DOI: 10.1093/molbev/msi242.
Bottlenecks, genetic polymorphism and speciation.
Nei M
Genetics. 2005; 170(1):1-4.
PMID: 15914771
PMC: 1449701.
DOI: 10.1093/genetics/170.1.1.
Solving the riddle of codon usage preferences: a test for translational selection.
Dos Reis M, Savva R, Wernisch L
Nucleic Acids Res. 2004; 32(17):5036-44.
PMID: 15448185
PMC: 521650.
DOI: 10.1093/nar/gkh834.