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Crystal Structure, Hirshfeld Surface, DFT, Mol-ecular Docking of 1-[(6--butyl-2-oxo-2-chromen-4-yl)meth-yl]-4,4-di-methyl-piperidine-2,6-dione and Cytotoxic Effects on Breast Cancer (MDA-MB 231), Human Alveolar Basal Epithelial (A549) Cell Lines

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Abstract

The title compound, CHNO, was synthesized by S2 reaction of bromo-methyl coumarin with 4,4-di-methyl-piperidine-2,6-dione. The mol-ecule crystalizes in the monoclinic system with space group 2/. The coumarin unit is almost planar with a dihedral angle between the aromatic rings of 0.81 (2)° and an r.m.s deviation of 0.042 Å. The piperidine ring adopts a chair conformation with the two methyl groups, one methyl group occupying an axial position and the other an equatorial position, exhibiting maximum stability. In the crystal, C-H⋯O inter-actions lead to the formation of head-to-head dimers with an (8)graph-set motif and (9) and (10) ring motifs along [001] and [100]. π-π inter-actions [centroid-centroid distances = 3.885 (2) and 3.744 (2) Å] are also observed. A Hirshfeld surface analysis was carried out, with the two-dimensional fingerprint plots indicating that the major contributions to the crystal packing are from H⋯H(57%), O⋯H(29.3%) and C⋯H(8.1%) inter-actions. The energy framework calculations reveal that dispersion energy ( = -267.7 kJ mol) dominates the other energies. The mol-ecular structure was optimized by density functional theory calculations using the B3LYP/6-311+G(d,p) basis set. The HOMO and LOMO orbitals were generated to determine the energy gap, which is 4.245 eV. Mol-ecular docking studies were carried out for the title mol-ecule as ligand and a protein as receptor giving binding affinities of -9.5 kcal mol for PDB ID: 5HG8 and -8.2 kcal mol for PDB ID:6 NLV. The compound was further subjected to biological studies against human cancer cell lines, namely cryopreserved triple negative human breast adenocarcinoma cells (MDA-MB-231cells) and adenocarcinomic human alveolar basal epithelial cells (A549 cells) giving ICvalues of 11.57 and 9.34 µ, respectively. The cytotoxicity results showed a good safety profile against HEK293 cell lines.

References
1.
Costa E, Magalhaes W, Di Stasi L . Recent Advances in Herbal-Derived Products with Skin Anti-Aging Properties and Cosmetic Applications. Molecules. 2022; 27(21). PMC: 9658815. DOI: 10.3390/molecules27217518. View

2.
Wang C, Pei A, Chen J, Yu H, Sun M, Liu C . A natural coumarin derivative esculetin offers neuroprotection on cerebral ischemia/reperfusion injury in mice. J Neurochem. 2012; 121(6):1007-13. DOI: 10.1111/j.1471-4159.2012.07744.x. View

3.
Najmanova I, Dosedel M, Hrdina R, Anzenbacher P, Filipsky T, Riha M . Cardiovascular effects of coumarins besides their antioxidant activity. Curr Top Med Chem. 2015; 15(9):830-49. DOI: 10.2174/1568026615666150220112437. View

4.
He X, Chen Y, Shi J, Tang W, Pan Z, Dong Z . New coumarin derivatives: design, synthesis and use as inhibitors of hMAO. Bioorg Med Chem. 2014; 22(14):3732-8. DOI: 10.1016/j.bmc.2014.05.002. View

5.
Stefanova T, Nikolova N, Toshkova R, Neychev H . Antitumor and immunomodulatory effect of coumarin and 7-hydroxycoumarin against Sarcoma 180 in mice. J Exp Ther Oncol. 2007; 6(2):107-15. View