» Articles » PMID: 39975114

Genome Report: First Whole Genome Assembly of (ball Python), a Model of Extreme Physiological and Metabolic Plasticity

Overview
Journal bioRxiv
Date 2025 Feb 20
PMID 39975114
Authors
Affiliations
Soon will be listed here.
Abstract

The study of nontraditional model organisms, particularly those exhibiting extreme phenotypes, offers unique insights into adaptive mechanisms of stress response and survival. Snakes, with their remarkable physiological, metabolic, and morphological adaptations, serve as powerful models for investigating these processes. Pythons are a unique model organism that have been studied for their extreme metabolic and physiological plasticity. To date, the Burmese python () is the only member of the family to have been sequenced. The low contiguity of this genome and rising challenges in obtaining Burmese pythons for study prompted us to sequence, assemble, and annotate the genome of the closely related ball python (). Using a hybrid sequencing approach, we generated a 1.45 Gb genome assembly with a contig N50 greater than 18 Mb and a BUSCO score of 98%, representing the highest quality genome to date for a member of the family. This assembly provides a valuable resource for studying snake-specific traits and evolutionary biology. Furthermore, it enables exploration of the molecular mechanisms underlying the remarkable cardiac and muscular adaptations in pythons, such as their ability to rapidly remodel organs following feeding and resist muscular atrophy during prolonged fasting. These insights have potential applications in human health, particularly in the development of therapies targeting cardiac hypertrophy and muscular atrophy.

References
1.
Andersen J, Rourke B, Caiozzo V, Bennett A, Hicks J . Physiology: postprandial cardiac hypertrophy in pythons. Nature. 2005; 434(7029):37-8. DOI: 10.1038/434037a. View

2.
Yin W, Wang Z, Li Q, Lian J, Zhou Y, Lu B . Evolutionary trajectories of snake genes and genomes revealed by comparative analyses of five-pacer viper. Nat Commun. 2016; 7:13107. PMC: 5059746. DOI: 10.1038/ncomms13107. View

3.
Stanke M, Diekhans M, Baertsch R, Haussler D . Using native and syntenically mapped cDNA alignments to improve de novo gene finding. Bioinformatics. 2008; 24(5):637-44. DOI: 10.1093/bioinformatics/btn013. View

4.
Riquelme C, Magida J, Harrison B, Wall C, Marr T, Secor S . Fatty acids identified in the Burmese python promote beneficial cardiac growth. Science. 2011; 334(6055):528-31. PMC: 3383835. DOI: 10.1126/science.1210558. View

5.
Kim D, Paggi J, Park C, Bennett C, Salzberg S . Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype. Nat Biotechnol. 2019; 37(8):907-915. PMC: 7605509. DOI: 10.1038/s41587-019-0201-4. View