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Cofactor F Tail Length Distribution in Different Environmental Samples

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Journal Heliyon
Specialty Social Sciences
Date 2024 Dec 6
PMID 39640720
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Abstract

Cofactor F is an electron carrier playing a crucial role in a variety of microorganisms during redox reactions of the primary and secondary metabolism due to its low redox potential and thus arouses increasing interest. In this study, cofactor F glutamyl tail length spectra in various habitats like manure, compost, soil, and digester sludge samples and their respective microbial communities were investigated using high performance liquid chromatography and an amplicon sequencing approach A previous study was used to identify F producing microorganisms. The highest concentration of cofactor F could be achieved in the horse manure, digester sludge, and mixed manure samples, which was approximately 100-fold higher than in all the other samples. The high content of the cofactor in the samples with high O availability pointed to the important role of the cofactor not only in redox reactions of anaerobic but also for aerobic microorganisms and indicated its ubiquitous character. The most abundant derivate was F-3 comprising the largest part of the cofactor derivates in seven out of ten samples. The high abundance of F-3 in samples with distinct properties (e.g. O and HO availability) showed its important role in redox reactions of the primary and secondary metabolism among prokaryotes.

References
1.
Prem E, Markt R, Lackner N, Illmer P, Wagner A . Microbial and Phenyl Acid Dynamics during the Start-up Phase of Anaerobic Straw Degradation in Meso- and Thermophilic Batch Reactors. Microorganisms. 2019; 7(12). PMC: 6956005. DOI: 10.3390/microorganisms7120657. View

2.
Schloss P, Westcott S, Ryabin T, Hall J, Hartmann M, Hollister E . Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol. 2009; 75(23):7537-41. PMC: 2786419. DOI: 10.1128/AEM.01541-09. View

3.
Wang P, Bashiri G, Gao X, Sawaya M, Tang Y . Uncovering the enzymes that catalyze the final steps in oxytetracycline biosynthesis. J Am Chem Soc. 2013; 135(19):7138-41. DOI: 10.1021/ja403516u. View

4.
Mori K, Iino T, Suzuki K, Yamaguchi K, Kamagata Y . Aceticlastic and NaCl-requiring methanogen "Methanosaeta pelagica" sp. nov., isolated from marine tidal flat sediment. Appl Environ Microbiol. 2012; 78(9):3416-23. PMC: 3346471. DOI: 10.1128/AEM.07484-11. View

5.
Wagner A, Praeg N, Reitschuler C, Illmer P . Effect of DNA extraction procedure, repeated extraction and ethidium monoazide (EMA)/propidium monoazide (PMA) treatment on overall DNA yield and impact on microbial fingerprints for bacteria, fungi and archaea in a reference soil. Appl Soil Ecol. 2015; 93:56-64. PMC: 4461152. DOI: 10.1016/j.apsoil.2015.04.005. View