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The Design and Engineering of Synthetic Genomes

Overview
Journal Nat Rev Genet
Specialty Genetics
Date 2024 Nov 7
PMID 39506144
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Abstract

Synthetic genomics seeks to design and construct entire genomes to mechanistically dissect fundamental questions of genome function and to engineer organisms for diverse applications, including bioproduction of high-value chemicals and biologics, advanced cell therapies, and stress-tolerant crops. Recent progress has been fuelled by advancements in DNA synthesis, assembly, delivery and editing. Computational innovations, such as the use of artificial intelligence to provide prediction of function, also provide increasing capabilities to guide synthetic genome design and construction. However, translating synthetic genome-scale projects from idea to implementation remains highly complex. Here, we aim to streamline this implementation process by comprehensively reviewing the strategies for design, construction, delivery, debugging and tailoring of synthetic genomes as well as their potential applications.

References
1.
Chari R, Church G . Beyond editing to writing large genomes. Nat Rev Genet. 2017; 18(12):749-760. PMC: 5793211. DOI: 10.1038/nrg.2017.59. View

2.
Zhang W, Mitchell L, Bader J, Boeke J . Synthetic Genomes. Annu Rev Biochem. 2020; 89:77-101. DOI: 10.1146/annurev-biochem-013118-110704. View

3.
Shalem O, Sanjana N, Zhang F . High-throughput functional genomics using CRISPR-Cas9. Nat Rev Genet. 2015; 16(5):299-311. PMC: 4503232. DOI: 10.1038/nrg3899. View

4.
Coradini A, Hull C, Ehrenreich I . Building genomes to understand biology. Nat Commun. 2020; 11(1):6177. PMC: 7710724. DOI: 10.1038/s41467-020-19753-2. View

5.
Agarwal K, Buchi H, Caruthers M, Gupta N, Khorana H, KLEPPE K . Total synthesis of the gene for an alanine transfer ribonucleic acid from yeast. Nature. 1970; 227(5253):27-34. DOI: 10.1038/227027a0. View