Pan-Cancer Analysis of Homologous Recombination Deficiency in Cell Lines
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Abstract
HRD is common in cancer and can be exploited therapeutically, as it sensitizes cells to DNA-damaging agents. Here, we scored more than 1,300 cancer cell lines for HRD using two different bioinformatic approaches, thereby enabling large-scale analyses that provide insights into the etiology and features of HRD.
Citing Articles
Sottnik J, Shackleford M, Nesiba C, Richer A, Swartz J, Rowland C bioRxiv. 2024; .
PMID: 39677775 PMC: 11642799. DOI: 10.1101/2023.10.29.564555.
References
1.
Li H, Durbin R
. Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics. 2009; 25(14):1754-60.
PMC: 2705234.
DOI: 10.1093/bioinformatics/btp324.
View
2.
Rempel E, Kluck K, Beck S, Ourailidis I, Kazdal D, Neumann O
. Pan-cancer analysis of genomic scar patterns caused by homologous repair deficiency (HRD). NPJ Precis Oncol. 2022; 6(1):36.
PMC: 9184602.
DOI: 10.1038/s41698-022-00276-6.
View
3.
Wasylishen A, Lozano G
. Attenuating the p53 Pathway in Human Cancers: Many Means to the Same End. Cold Spring Harb Perspect Med. 2016; 6(8).
PMC: 4968169.
DOI: 10.1101/cshperspect.a026211.
View
4.
Farmer H, McCabe N, Lord C, Tutt A, Johnson D, Richardson T
. Targeting the DNA repair defect in BRCA mutant cells as a therapeutic strategy. Nature. 2005; 434(7035):917-21.
DOI: 10.1038/nature03445.
View
5.
Lakhani S, Reis-Filho J, Fulford L, Penault-Llorca F, van der Vijver M, Parry S
. Prediction of BRCA1 status in patients with breast cancer using estrogen receptor and basal phenotype. Clin Cancer Res. 2005; 11(14):5175-80.
DOI: 10.1158/1078-0432.CCR-04-2424.
View