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Identification of a Novel NADPH Generation Reaction in the Pentose Phosphate Pathway in Using MBFP

Overview
Journal J Bacteriol
Specialty Microbiology
Date 2024 Oct 10
PMID 39387572
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Abstract

NADPH is a redox cofactor that drives the anabolic reactions. Although major NADPH generation reactions have been identified in , some minor reactions have not been identified. In the present study, we explored novel NADPH generation reactions by monitoring the fluorescence dynamics after the addition of carbon sources to starved cells, using a metagenome-derived blue fluorescent protein (mBFP) as an intracellular NADPH reporter. Perturbation analyses were performed on a glucose-6-phosphate isomerase (PGI) deletion strain and its parental strain. Interestingly, mBFP fluorescence increased not only in the parental strain but also in the ΔPGI strain after the addition of xylose. Because the ΔPGI strain cannot metabolize xylose through the oxidative pentose phosphate pathway, this suggests that an unexpected NADPH generation reaction contributes to an increase in fluorescence. To unravel this mystery, we deleted the NADPH generation enzymes including transhydrogenase, isocitrate dehydrogenase, NADP-dependent malic enzyme, glucose-6-phosphate dehydrogenase (G6PDH), and 6-phosphogluconate dehydrogenase (6PGDH) in the ΔPGI strain, and revealed that G6PDH and 6PGDH contribute to an increase in fluorescence under xylose conditions. assays using purified enzymes showed that G6PDH can produce NADPH using erythrose-4-phosphate (E4P) as a substitute for glucose-6-phosphate. Because the (0.65 mM) for E4P was much higher than the reported intracellular E4P concentrations in , little E4P must be metabolized through this bypass in the parental strain. However, the flux would increase when E4P accumulates in the cells owing to genetic modifications. This finding provides a metabolic engineering strategy for generating NADPH to produce useful compounds using xylose as a carbon source.IMPORTANCEBecause NADPH is consumed during the synthesis of various useful compounds, enhancing NADPH regeneration is highly desirable in metabolic engineering. In this study, we explored novel NADPH generation reactions in using a fluorescent NADPH reporter and found that glucose-6-phosphate dehydrogenase can produce NADPH using erythrose-4-phosphate as a substrate under xylose conditions. Xylose is an abundant sugar in nature and is an attractive carbon source for bioproduction. Therefore, this finding contributes to novel pathway engineering strategies using a xylose carbon source in to produce useful compounds that consume NADPH for their synthesis.

References
1.
Li S, Ye Z, Moreb E, Hennigan J, Castellanos D, Yang T . Dynamic control over feedback regulatory mechanisms improves NADPH flux and xylitol biosynthesis in engineered E. coli. Metab Eng. 2021; 64:26-40. DOI: 10.1016/j.ymben.2021.01.005. View

2.
Jan J, Martinez I, Wang Y, Bennett G, San K . Metabolic engineering and transhydrogenase effects on NADPH availability in Escherichia coli. Biotechnol Prog. 2013; 29(5):1124-30. DOI: 10.1002/btpr.1765. View

3.
Li W, Wu H, Li M, San K . Effect of NADPH availability on free fatty acid production in Escherichia coli. Biotechnol Bioeng. 2017; 115(2):444-452. DOI: 10.1002/bit.26464. View

4.
Chemler J, Fowler Z, McHugh K, Koffas M . Improving NADPH availability for natural product biosynthesis in Escherichia coli by metabolic engineering. Metab Eng. 2009; 12(2):96-104. DOI: 10.1016/j.ymben.2009.07.003. View

5.
Kitagawa M, Ara T, Arifuzzaman M, Ioka-Nakamichi T, Inamoto E, Toyonaga H . Complete set of ORF clones of Escherichia coli ASKA library (a complete set of E. coli K-12 ORF archive): unique resources for biological research. DNA Res. 2006; 12(5):291-9. DOI: 10.1093/dnares/dsi012. View