A Chromosome-scale Reference Genome of Grasspea (Lathyrus Sativus)
Overview
Authors
Authors
Affiliations
Affiliations
Soon will be listed here.
Abstract
Grasspea (Lathyrus sativus L.) is an underutilised but promising legume crop with tolerance to a wide range of abiotic and biotic stress factors, and potential for climate-resilient agriculture. Despite a long history and wide geographical distribution of cultivation, only limited breeding resources are available. This paper reports a 5.96 Gbp genome assembly of grasspea genotype LS007, of which 5.03 Gbp is scaffolded into 7 pseudo-chromosomes. The assembly has a BUSCO completeness score of 99.1% and is annotated with 31719 gene models and repeat elements. This represents the most contiguous and accurate assembly of the grasspea genome to date.
References
1.
Macas J, Novak P, Pellicer J, cizkova J, Koblizkova A, Neumann P
. In Depth Characterization of Repetitive DNA in 23 Plant Genomes Reveals Sources of Genome Size Variation in the Legume Tribe Fabeae. PLoS One. 2015; 10(11):e0143424.
PMC: 4659654.
DOI: 10.1371/journal.pone.0143424.
View
2.
Kuznetsov D, Tegenfeldt F, Manni M, Seppey M, Berkeley M, Kriventseva E
. OrthoDB v11: annotation of orthologs in the widest sampling of organismal diversity. Nucleic Acids Res. 2022; 51(D1):D445-D451.
PMC: 9825584.
DOI: 10.1093/nar/gkac998.
View
3.
Santos C, Martins D, Rubiales D, Vaz Patto M
. Partial Resistance Against and Under Different Genetic Control in : Outcomes from a Linkage Mapping Approach. Plant Dis. 2020; 104(11):2875-2884.
DOI: 10.1094/PDIS-03-20-0513-RE.
View
4.
Kreplak J, Madoui M, Capal P, Novak P, Labadie K, Aubert G
. A reference genome for pea provides insight into legume genome evolution. Nat Genet. 2019; 51(9):1411-1422.
DOI: 10.1038/s41588-019-0480-1.
View
5.
Rajarammohan S, Kaur L, Verma A, Singh D, Mantri S, Roy J
. Genome sequencing and assembly of Lathyrus sativus - a nutrient-rich hardy legume crop. Sci Data. 2023; 10(1):32.
PMC: 9845207.
DOI: 10.1038/s41597-022-01903-4.
View