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Decoding the Foodome: Molecular Networks Connecting Diet and Health

Overview
Journal Annu Rev Nutr
Publisher Annual Reviews
Date 2024 Aug 29
PMID 39207880
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Abstract

Diet, a modifiable risk factor, plays a pivotal role in most diseases, from cardiovascular disease to type 2 diabetes mellitus, cancer, and obesity. However, our understanding of the mechanistic role of the chemical compounds found in food remains incomplete. In this review, we explore the "dark matter" of nutrition, going beyond the macro- and micronutrients documented by national databases to unveil the exceptional chemical diversity of food composition. We also discuss the need to explore the impact of each compound in the presence of associated chemicals and relevant food sources and describe the tools that will allow us to do so. Finally, we discuss the role of network medicine in understanding the mechanism of action of each food molecule. Overall, we illustrate the important role of network science and artificial intelligence in our ability to reveal nutrition's multifaceted role in health and disease.

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References
1.
Callaway E . AlphaFold's new rival? Meta AI predicts shape of 600 million proteins. Nature. 2022; 611(7935):211-212. DOI: 10.1038/d41586-022-03539-1. View

2.
Bennett W, He S, Bilodeau C, Jones D, Sun D, Kim H . Predicting Small Molecule Transfer Free Energies by Combining Molecular Dynamics Simulations and Deep Learning. J Chem Inf Model. 2020; 60(11):5375-5381. DOI: 10.1021/acs.jcim.0c00318. View

3.
Nasirian F, Menichetti G . Molecular Interaction Networks and Cardiovascular Disease Risk: The Role of Food Bioactive Small Molecules. Arterioscler Thromb Vasc Biol. 2023; 43(6):813-823. DOI: 10.1161/ATVBAHA.122.318332. View

4.
Jew S, AbuMweis S, Jones P . Evolution of the human diet: linking our ancestral diet to modern functional foods as a means of chronic disease prevention. J Med Food. 2009; 12(5):925-34. DOI: 10.1089/jmf.2008.0268. View

5.
Bar-Even A, Noor E, Flamholz A, Buescher J, Milo R . Hydrophobicity and charge shape cellular metabolite concentrations. PLoS Comput Biol. 2011; 7(10):e1002166. PMC: 3188480. DOI: 10.1371/journal.pcbi.1002166. View