The Genome Sequence of the Nematode (Rhabditida, Rhabditidae) (Kiontke, 1997)
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Abstract
We present a genome assembly of the free-living nematode (Nematoda; Chromadorea; Rhabditida; Rhabditidae). The genome sequence is 51.3 megabases in span. Most of the assembly is scaffolded into six chromosomal pseudomolecules, including the X sex chromosome. The mitochondrial genome has also been assembled and is 15.15 kilobases in length.
References
1.
Chow W, Brugger K, Caccamo M, Sealy I, Torrance J, Howe K
. gEVAL - a web-based browser for evaluating genome assemblies. Bioinformatics. 2016; 32(16):2508-10.
PMC: 4978925.
DOI: 10.1093/bioinformatics/btw159.
View
2.
Bernt M, Donath A, Juhling F, Externbrink F, Florentz C, Fritzsch G
. MITOS: improved de novo metazoan mitochondrial genome annotation. Mol Phylogenet Evol. 2012; 69(2):313-9.
DOI: 10.1016/j.ympev.2012.08.023.
View
3.
Uliano-Silva M, R N Ferreira J, Krasheninnikova K, Formenti G, Abueg L, Torrance J
. MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. BMC Bioinformatics. 2023; 24(1):288.
PMC: 10354987.
DOI: 10.1186/s12859-023-05385-y.
View
4.
Ewels P, Peltzer A, Fillinger S, Patel H, Alneberg J, Wilm A
. The nf-core framework for community-curated bioinformatics pipelines. Nat Biotechnol. 2020; 38(3):276-278.
DOI: 10.1038/s41587-020-0439-x.
View
5.
Veiga Leprevost F, Gruning B, Alves Aflitos S, Rost H, Uszkoreit J, Barsnes H
. BioContainers: an open-source and community-driven framework for software standardization. Bioinformatics. 2017; 33(16):2580-2582.
PMC: 5870671.
DOI: 10.1093/bioinformatics/btx192.
View