Cherlin T, Jing Y, Shah S, Kennedy A, Telonis A, Pliatsika V
BMC Biol. 2024; 22(1):205.
PMID: 39267057
PMC: 11397057.
DOI: 10.1186/s12915-024-01970-6.
Rakheja I, Ansari A, Ray A, Chandra Joshi D, Maiti S
Mol Ther Nucleic Acids. 2022; 30:241-256.
PMID: 36284512
PMC: 9576543.
DOI: 10.1016/j.omtn.2022.09.016.
Ripmeester E, Welting T, van den Akker G, Surtel D, Steijns J, Cremers A
PLoS One. 2022; 17(2):e0263430.
PMID: 35139106
PMC: 8827423.
DOI: 10.1371/journal.pone.0263430.
Kumar S, Gonzalez E, Rameshwar P, Etchegaray J
Cancers (Basel). 2020; 12(12).
PMID: 33291485
PMC: 7762117.
DOI: 10.3390/cancers12123657.
Kramer M, Janssen K, Palos K, Nelson A, Vandivier L, Garcia B
Plant Direct. 2020; 4(7):e00239.
PMID: 32724893
PMC: 7379018.
DOI: 10.1002/pld3.239.
Ribosomal RNA fragmentation into short RNAs (rRFs) is modulated in a sex- and population of origin-specific manner.
Cherlin T, Magee R, Jing Y, Pliatsika V, Loher P, Rigoutsos I
BMC Biol. 2020; 18(1):38.
PMID: 32279660
PMC: 7153239.
DOI: 10.1186/s12915-020-0763-0.
Molecular mechanisms of long noncoding RNAs and their role in disease pathogenesis.
Hu G, Niu F, Humburg B, Liao K, Bendi S, Callen S
Oncotarget. 2018; 9(26):18648-18663.
PMID: 29719633
PMC: 5915100.
DOI: 10.18632/oncotarget.24307.
Hiding in Plain Sight: Rediscovering the Importance of Noncoding RNA in Human Malignancy.
Feeley K, Edmonds M
Cancer Res. 2018; 78(9):2149-2158.
PMID: 29632135
PMC: 6064611.
DOI: 10.1158/0008-5472.CAN-17-2675.
CHSalign: A Web Server That Builds upon Junction-Explorer and RNAJAG for Pairwise Alignment of RNA Secondary Structures with Coaxial Helical Stacking.
Hua L, Song Y, Kim N, Laing C, Wang J, Schlick T
PLoS One. 2016; 11(1):e0147097.
PMID: 26789998
PMC: 4720362.
DOI: 10.1371/journal.pone.0147097.
Linking RNA biology to lncRNAs.
Goff L, Rinn J
Genome Res. 2015; 25(10):1456-65.
PMID: 26430155
PMC: 4579330.
DOI: 10.1101/gr.191122.115.
Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization.
Locati M, Terpstra I, de Leeuw W, Kuzak M, Rauwerda H, Ensink W
Nucleic Acids Res. 2015; 43(14):e89.
PMID: 25870415
PMC: 4538800.
DOI: 10.1093/nar/gkv303.
Effects of yiqi huoxue recipe and Coxsackie virus B type 3 on the expression of ribosomal protein S20 in rat cardiac myocytes.
Zhang M, Zhang Y, Esther J, He W, Che H, Gu P
Chin J Integr Med. 2011; 17(5):376-80.
PMID: 21611902
DOI: 10.1007/s11655-011-0729-8.
An RNA toolbox for single-molecule force spectroscopy studies.
Vilfan I, Kamping W, van den Hout M, Candelli A, Hage S, Dekker N
Nucleic Acids Res. 2007; 35(19):6625-39.
PMID: 17905817
PMC: 2095808.
DOI: 10.1093/nar/gkm585.
Dinoflagellate 17S rRNA sequence inferred from the gene sequence: Evolutionary implications.
Herzog M, Maroteaux L
Proc Natl Acad Sci U S A. 1986; 83(22):8644-8.
PMID: 16578795
PMC: 386987.
DOI: 10.1073/pnas.83.22.8644.
Role of the ITS2-proximal stem and evidence for indirect recognition of processing sites in pre-rRNA processing in yeast.
Cote C, Peculis B
Nucleic Acids Res. 2001; 29(10):2106-16.
PMID: 11353080
PMC: 55465.
DOI: 10.1093/nar/29.10.2106.
Magnesium ions mediate contacts between phosphoryl oxygens at positions 2122 and 2176 of the 23S rRNA and ribosomal protein L1.
Drygin D, Zimmermann R
RNA. 2001; 6(12):1714-26.
PMID: 11142372
PMC: 1370042.
DOI: 10.1017/s1355838200001436.
The European large subunit ribosomal RNA database.
De Rijk P, Wuyts J, Van de Peer Y, Winkelmans T, De Wachter R
Nucleic Acids Res. 1999; 28(1):177-8.
PMID: 10592218
PMC: 102430.
DOI: 10.1093/nar/28.1.177.
Metal ion probing of rRNAs: evidence for evolutionarily conserved divalent cation binding pockets.
Polacek N, Barta A
RNA. 1998; 4(10):1282-94.
PMID: 9769102
PMC: 1369700.
DOI: 10.1017/s1355838298980347.
RimM and RbfA are essential for efficient processing of 16S rRNA in Escherichia coli.
Bylund G, Wipemo L, Lundberg L, Wikstrom P
J Bacteriol. 1998; 180(1):73-82.
PMID: 9422595
PMC: 106851.
DOI: 10.1128/JB.180.1.73-82.1998.
Database on the structure of large ribosomal subunit RNA.
De Rijk P, Caers A, Van de Peer Y, De Wachter R
Nucleic Acids Res. 1998; 26(1):183-6.
PMID: 9399830
PMC: 147202.
DOI: 10.1093/nar/26.1.183.