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Toward a Comprehensive View of Gene Architecture During Transcription

Overview
Publisher Elsevier
Specialties Biology
Genetics
Date 2024 Feb 3
PMID 38309073
Authors
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Abstract

The activation of genes within the nucleus of eukaryotic cells is a tightly regulated process, orchestrated by a complex interplay of various physical properties and interacting factors. Studying the multitude of components and features that collectively contribute to gene activation has proven challenging due to the complexities of simultaneously visualizing the dynamic and transiently interacting elements that coalesce within the small space occupied by each individual gene. However, various labeling and imaging advances are now starting to overcome this challenge, enabling visualization of gene activation at different lengths and timescales. In this review, we aim to highlight these microscopy-based advances and suggest how they can be combined to provide a comprehensive view of the mechanisms regulating gene activation.

References
1.
Alexander J, Guan J, Li B, Maliskova L, Song M, Shen Y . Live-cell imaging reveals enhancer-dependent transcription in the absence of enhancer proximity. Elife. 2019; 8. PMC: 6534382. DOI: 10.7554/eLife.41769. View

2.
Woodworth M, Ng K, Halpern A, Pease N, Nguyen P, Kueh H . Multiplexed single-cell profiling of chromatin states at genomic loci by expansion microscopy. Nucleic Acids Res. 2021; 49(14):e82. PMC: 8373070. DOI: 10.1093/nar/gkab423. View

3.
Bates M, Huang B, Dempsey G, Zhuang X . Multicolor super-resolution imaging with photo-switchable fluorescent probes. Science. 2007; 317(5845):1749-53. PMC: 2633025. DOI: 10.1126/science.1146598. View

4.
Miron E, Oldenkamp R, Brown J, Pinto D, Xu C, Faria A . Chromatin arranges in chains of mesoscale domains with nanoscale functional topography independent of cohesin. Sci Adv. 2020; 6(39). PMC: 7531892. DOI: 10.1126/sciadv.aba8811. View

5.
Chen H, Levo M, Barinov L, Fujioka M, Jaynes J, Gregor T . Dynamic interplay between enhancer-promoter topology and gene activity. Nat Genet. 2018; 50(9):1296-1303. PMC: 6119122. DOI: 10.1038/s41588-018-0175-z. View