6.
Mabuchi K, Miya M, Azuma Y, Nishida M
. Independent evolution of the specialized pharyngeal jaw apparatus in cichlid and labrid fishes. BMC Evol Biol. 2007; 7:10.
PMC: 1797158.
DOI: 10.1186/1471-2148-7-10.
View
7.
Breton S, Milani L, Ghiselli F, Guerra D, Stewart D, Passamonti M
. A resourceful genome: updating the functional repertoire and evolutionary role of animal mitochondrial DNAs. Trends Genet. 2014; 30(12):555-64.
DOI: 10.1016/j.tig.2014.09.002.
View
8.
Arnason E, Rand D
. Heteroplasmy of short tandem repeats in mitochondrial DNA of Atlantic cod, Gadus morhua. Genetics. 1992; 132(1):211-20.
PMC: 1205118.
DOI: 10.1093/genetics/132.1.211.
View
9.
Kumar S, Stecher G, Li M, Knyaz C, Tamura K
. MEGA X: Molecular Evolutionary Genetics Analysis across Computing Platforms. Mol Biol Evol. 2018; 35(6):1547-1549.
PMC: 5967553.
DOI: 10.1093/molbev/msy096.
View
10.
LARKIN M, Blackshields G, Brown N, Chenna R, McGettigan P, McWilliam H
. Clustal W and Clustal X version 2.0. Bioinformatics. 2007; 23(21):2947-8.
DOI: 10.1093/bioinformatics/btm404.
View
11.
Ghiselli F, Milani L, Guerra D, Chang P, Breton S, Nuzhdin S
. Structure, transcription, and variability of metazoan mitochondrial genome: perspectives from an unusual mitochondrial inheritance system. Genome Biol Evol. 2013; 5(8):1535-54.
PMC: 3762199.
DOI: 10.1093/gbe/evt112.
View
12.
Bernt M, Bleidorn C, Braband A, Dambach J, Donath A, Fritzsch G
. A comprehensive analysis of bilaterian mitochondrial genomes and phylogeny. Mol Phylogenet Evol. 2013; 69(2):352-64.
DOI: 10.1016/j.ympev.2013.05.002.
View
13.
Broughton R, Dowling T
. Length variation in mitochondrial DNA of the minnow Cyprinella spiloptera. Genetics. 1994; 138(1):179-90.
PMC: 1206129.
DOI: 10.1093/genetics/138.1.179.
View
14.
Lavoue S, Miya M, Nishida M
. Mitochondrial phylogenomics of anchovies (family Engraulidae) and recurrent origins of pronounced miniaturization in the order Clupeiformes. Mol Phylogenet Evol. 2009; 56(1):480-5.
DOI: 10.1016/j.ympev.2009.11.022.
View
15.
Inoue J, Miya M, Tsukamoto K, Nishida M
. A mitogenomic perspective on the basal teleostean phylogeny: resolving higher-level relationships with longer DNA sequences. Mol Phylogenet Evol. 2001; 20(2):275-85.
DOI: 10.1006/mpev.2001.0970.
View
16.
Darriba D, Taboada G, Doallo R, Posada D
. jModelTest 2: more models, new heuristics and parallel computing. Nat Methods. 2012; 9(8):772.
PMC: 4594756.
DOI: 10.1038/nmeth.2109.
View
17.
Ward R
. DNA barcode divergence among species and genera of birds and fishes. Mol Ecol Resour. 2011; 9(4):1077-85.
DOI: 10.1111/j.1755-0998.2009.02541.x.
View
18.
Kannan S, Rogozin I, Koonin E
. MitoCOGs: clusters of orthologous genes from mitochondria and implications for the evolution of eukaryotes. BMC Evol Biol. 2014; 14:237.
PMC: 4256733.
DOI: 10.1186/s12862-014-0237-5.
View
19.
Clayton D
. Nuclear gadgets in mitochondrial DNA replication and transcription. Trends Biochem Sci. 1991; 16(3):107-11.
DOI: 10.1016/0968-0004(91)90043-u.
View
20.
Perna N, Kocher T
. Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes. J Mol Evol. 1995; 41(3):353-8.
DOI: 10.1007/BF00186547.
View