» Articles » PMID: 37621574

The Genome Sequence of the Common Carder Bee, (Scopoli, 1763)

Overview
Date 2023 Aug 25
PMID 37621574
Authors
Affiliations
Soon will be listed here.
Abstract

We present a genome assembly from an individual female (the Common Carder Bee; Arthropoda; Insecta; Hymenoptera; Apidae). The genome sequence is 307.5 megabases in span. Most of the assembly is scaffolded into 17 chromosomal pseudomolecules. The mitochondrial genome has also been assembled and is 21.9 kilobases in length. Gene annotation of this assembly on Ensembl identified 12,999 protein coding genes.

Citing Articles

Facilitating high throughput collections-based genomics: a comparison of DNA extraction and library building methods.

Marsh W, Hall A, Barnes I, Price B Sci Rep. 2025; 15(1):6013.

PMID: 39972011 PMC: 11839992. DOI: 10.1038/s41598-025-88443-0.


Chromosome-Level Assembly and Annotation of the Genome of the Endangered Giant Patagonian Bumble Bee Bombus dahlbomii.

Martinez L, Zattara E, Arbetman M, Morales C, Masonbrink R, Severin A Genome Biol Evol. 2024; 16(7).

PMID: 38973368 PMC: 11776373. DOI: 10.1093/gbe/evae146.


High-throughput sequencing of insect specimens with sub-optimal DNA preservation using a practical, plate-based Illumina-compatible Tn5 transposase library preparation method.

Cobb L, de Muinck E, Kollias S, Skage M, Gilfillan G, Sydenham M PLoS One. 2024; 19(3):e0300865.

PMID: 38517905 PMC: 10959394. DOI: 10.1371/journal.pone.0300865.

References
1.
Chow W, Brugger K, Caccamo M, Sealy I, Torrance J, Howe K . gEVAL - a web-based browser for evaluating genome assemblies. Bioinformatics. 2016; 32(16):2508-10. PMC: 4978925. DOI: 10.1093/bioinformatics/btw159. View

2.
Rao S, Huntley M, Durand N, Stamenova E, Bochkov I, Robinson J . A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping. Cell. 2014; 159(7):1665-80. PMC: 5635824. DOI: 10.1016/j.cell.2014.11.021. View

3.
Uliano-Silva M, R N Ferreira J, Krasheninnikova K, Formenti G, Abueg L, Torrance J . MitoHiFi: a python pipeline for mitochondrial genome assembly from PacBio high fidelity reads. BMC Bioinformatics. 2023; 24(1):288. PMC: 10354987. DOI: 10.1186/s12859-023-05385-y. View

4.
Manni M, Berkeley M, Seppey M, Simao F, Zdobnov E . BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes. Mol Biol Evol. 2021; 38(10):4647-4654. PMC: 8476166. DOI: 10.1093/molbev/msab199. View

5.
Simao F, Waterhouse R, Ioannidis P, Kriventseva E, Zdobnov E . BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs. Bioinformatics. 2015; 31(19):3210-2. DOI: 10.1093/bioinformatics/btv351. View