» Articles » PMID: 37599153

Spatial Promoter-enhancer Hubs in Cancer: Organization, Regulation, and Function

Overview
Journal Trends Cancer
Publisher Cell Press
Specialty Oncology
Date 2023 Aug 20
PMID 37599153
Authors
Affiliations
Soon will be listed here.
Abstract

Transcriptional dysregulation is a hallmark of cancer and can be driven by altered enhancer landscapes. Recent studies in genome organization have revealed that multiple enhancers and promoters can spatially coalesce to form dynamic topological assemblies, known as promoter-enhancer hubs, which strongly correlate with elevated gene expression. In this review, we discuss the structure and complexity of promoter-enhancer hubs recently identified in multiple cancer types. We further discuss underlying mechanisms driving dysregulation of promoter-enhancer hubs and speculate on their functional role in pathogenesis. Understanding the role of promoter-enhancer hubs in transcriptional dysregulation can provide insight into new therapeutic approaches to target these complex features of genome organization.

Citing Articles

Three-dimensional regulatory hubs support oncogenic programs in glioblastoma.

Breves S, Di Giammartino D, Nicholson J, Cirigliano S, Mahmood S, Lee U bioRxiv. 2025; .

PMID: 40034649 PMC: 11875237. DOI: 10.1101/2024.12.20.629544.


Integration of multi-omics data revealed the orphan CpG islands and enhancer-dominated -regulatory network in glioma.

Yao J, Yao P, Li Y, He K, Ma X, Yang Q iScience. 2024; 27(10):110946.

PMID: 39391717 PMC: 11465130. DOI: 10.1016/j.isci.2024.110946.


Transcription factor condensates, 3D clustering, and gene expression enhancement of the regulon.

Lee J, Simpson L, Li Y, Becker S, Zou F, Zhang X Elife. 2024; 13.

PMID: 39347738 PMC: 11441978. DOI: 10.7554/eLife.96028.


Enhancer-promoter hubs organize transcriptional networks promoting oncogenesis and drug resistance.

Perlman B, Burget N, Zhou Y, Schwartz G, Petrovic J, Modrusan Z Nat Commun. 2024; 15(1):8070.

PMID: 39277592 PMC: 11401928. DOI: 10.1038/s41467-024-52375-6.


Oncogenic transcription factors instruct promoter-enhancer hubs in individual triple negative breast cancer cells.

Zhao J, Zhou Y, Tzelepis I, Burget N, Shi J, Faryabi R Sci Adv. 2024; 10(32):eadl4043.

PMID: 39110799 PMC: 11305386. DOI: 10.1126/sciadv.adl4043.


References
1.
Nagano T, Lubling Y, Stevens T, Schoenfelder S, Yaffe E, Dean W . Single-cell Hi-C reveals cell-to-cell variability in chromosome structure. Nature. 2013; 502(7469):59-64. PMC: 3869051. DOI: 10.1038/nature12593. View

2.
Zuin J, Roth G, Zhan Y, Cramard J, Redolfi J, Piskadlo E . Nonlinear control of transcription through enhancer-promoter interactions. Nature. 2022; 604(7906):571-577. PMC: 9021019. DOI: 10.1038/s41586-022-04570-y. View

3.
Lieberman-Aiden E, van Berkum N, Williams L, Imakaev M, Ragoczy T, Telling A . Comprehensive mapping of long-range interactions reveals folding principles of the human genome. Science. 2009; 326(5950):289-93. PMC: 2858594. DOI: 10.1126/science.1181369. View

4.
Sanalkumar R, Dong R, Lee L, Xing Y, Iyer S, Letovanec I . Highly connected 3D chromatin networks established by an oncogenic fusion protein shape tumor cell identity. Sci Adv. 2023; 9(13):eabo3789. PMC: 10718307. DOI: 10.1126/sciadv.abo3789. View

5.
Hay D, Hughes J, Babbs C, Davies J, Graham B, Hanssen L . Genetic dissection of the α-globin super-enhancer in vivo. Nat Genet. 2016; 48(8):895-903. PMC: 5058437. DOI: 10.1038/ng.3605. View