» Articles » PMID: 37503011

Beyond Correlation: Optimal Transport Metrics For Characterizing Representational Stability and Remapping in Neurons Encoding Spatial Memory

Overview
Journal bioRxiv
Date 2023 Jul 28
PMID 37503011
Authors
Affiliations
Soon will be listed here.
Abstract

Spatial representations in the entorhinal cortex (EC) and hippocampus (HPC) are fundamental to cognitive functions like navigation and memory. These representations, embodied in spatial field maps, dynamically remap in response to environmental changes. However, current methods, such as Pearson's correlation coefficient, struggle to capture the complexity of these remapping events, especially when fields do not overlap, or transformations are non-linear. This limitation hinders our understanding and quantification of remapping, a key aspect of spatial memory function. To address this, we propose a family of metrics based on the Earth Mover's Distance (EMD) as a versatile framework for characterizing remapping. Applied to both normalized and unnormalized distributions, the EMD provides a granular, noise-resistant, and rate-robust description of remapping. This approach enables the identification of specific cell types and the characterization of remapping in various scenarios, including disease models. Furthermore, the EMD's properties can be manipulated to identify spatially tuned cell types and to explore remapping as it relates to alternate information forms such as spatiotemporal coding. By employing approximations of the EMD, we present a feasible, lightweight approach that complements traditional methods. Our findings underscore the potential of the EMD as a powerful tool for enhancing our understanding of remapping in the brain and its implications for spatial navigation, memory studies and beyond.

References
1.
Langston R, Ainge J, Couey J, Canto C, Bjerknes T, Witter M . Development of the spatial representation system in the rat. Science. 2010; 328(5985):1576-80. DOI: 10.1126/science.1188210. View

2.
Brandon M, Bogaard A, Libby C, Connerney M, Gupta K, Hasselmo M . Reduction of theta rhythm dissociates grid cell spatial periodicity from directional tuning. Science. 2011; 332(6029):595-9. PMC: 3252766. DOI: 10.1126/science.1201652. View

3.
Solstad T, Boccara C, Kropff E, Moser M, Moser E . Representation of geometric borders in the entorhinal cortex. Science. 2008; 322(5909):1865-8. DOI: 10.1126/science.1166466. View

4.
Fenton A, Csizmadia G, Muller R . Conjoint control of hippocampal place cell firing by two visual stimuli. I. The effects of moving the stimuli on firing field positions. J Gen Physiol. 2000; 116(2):191-209. PMC: 2229496. DOI: 10.1085/jgp.116.2.191. View

5.
Ferbinteanu J, Shapiro M . Prospective and retrospective memory coding in the hippocampus. Neuron. 2003; 40(6):1227-39. DOI: 10.1016/s0896-6273(03)00752-9. View