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A Sampling Strategy for Genome Sequencing the British Terrestrial Arthropod Fauna

Abstract

The Darwin Tree of Life (DToL) project aims to sequence and assemble high-quality genomes from all eukaryote species in Britain and Ireland, with the first phase of the project concentrating on family-level coverage plus species of particular ecological, biomedical or evolutionary interest. We summarise the processes involved in (1) assessing the UK arthropod fauna and the status of individual species on UK lists; (2) prioritising and collecting species for initial genome sequencing; (3) handling methods to ensure that high-quality genomic DNA is preserved; and (4) compiling standard operating procedures for processing specimens for genome sequencing, identification verification and voucher specimen curation. We briefly explore some lessons learned from the pilot phase of DToL and the impact of the Covid-19 pandemic.

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References
1.
. Sequence locally, think globally: The Darwin Tree of Life Project. Proc Natl Acad Sci U S A. 2022; 119(4). PMC: 8797607. DOI: 10.1073/pnas.2115642118. View

2.
Hebert P, Cywinska A, Ball S, deWaard J . Biological identifications through DNA barcodes. Proc Biol Sci. 2003; 270(1512):313-21. PMC: 1691236. DOI: 10.1098/rspb.2002.2218. View

3.
Dale-Skey N, Askew R, Noyes J, Livermore L, Broad G . Checklist of British and Irish Hymenoptera - Chalcidoidea and Mymarommatoidea. Biodivers Data J. 2016; (4):e8013. PMC: 4910507. DOI: 10.3897/BDJ.4.e8013. View

4.
Prous M, Lee K, Mutanen M . Cross-contamination and strong mitonuclear discordance in Empria sawflies (Hymenoptera, Tenthredinidae) in the light of phylogenomic data. Mol Phylogenet Evol. 2019; 143:106670. DOI: 10.1016/j.ympev.2019.106670. View

5.
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R . DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol Mar Biol Biotechnol. 1994; 3(5):294-9. View