Isolation of 5' Regulatory Region of Gene and Its Functional Characterization Through Transient Expression Analysis in Tobacco and Sugarcane

Overview

Journal 3 Biotech

Publisher Springer

Specialty Biotechnology

Date 2023 Jun 12

PMID 37304407

Authors

Manoj Vadakkenchery Mohanan

Anunanthini Pushpanathan

Ashwin Narayan Jayanarayanan

Dharshini Selvarajan

Sathishkumar Ramalingam

Hemaprabha Govind

Appunu Chinnaswamy

Affiliations

Soon will be listed here.

Abstract

Supplementary Information: The online version contains supplementary material available at 10.1007/s13205-023-03650-8.

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References

Lu C, Lim E, Yu S . Sugar response sequence in the promoter of a rice alpha-amylase gene serves as a transcriptional enhancer. J Biol Chem. 1998; 273(17):10120-31. DOI: 10.1074/jbc.273.17.10120. View

Fujita Y, Fujita M, Shinozaki K, Yamaguchi-Shinozaki K . ABA-mediated transcriptional regulation in response to osmotic stress in plants. J Plant Res. 2011; 124(4):509-25. DOI: 10.1007/s10265-011-0412-3. View

Klay I, Gouia S, Liu M, Mila I, Khoudi H, Bernadac A . Ethylene Response Factors (ERF) are differentially regulated by different abiotic stress types in tomato plants. Plant Sci. 2018; 274:137-145. DOI: 10.1016/j.plantsci.2018.05.023. View

Shi L, Song J, Guo C, Wang B, Guan Z, Yang P . A CACTA-like transposable element in the upstream region of BnaA9.CYP78A9 acts as an enhancer to increase silique length and seed weight in rapeseed. Plant J. 2019; 98(3):524-539. DOI: 10.1111/tpj.14236. View

Wang Y, Hu Z, Yang Y, Chen X, Chen G . Function annotation of an SBP-box gene in Arabidopsis based on analysis of co-expression networks and promoters. Int J Mol Sci. 2009; 10(1):116-132. PMC: 2662457. DOI: 10.3390/ijms10010116. View

Uberti Manassero N, Viola I, Welchen E, Gonzalez D . TCP transcription factors: architectures of plant form. Biomol Concepts. 2014; 4(2):111-27. DOI: 10.1515/bmc-2012-0051. View

Horsch R, Rogers S, Fraley R . Transgenic plants. Cold Spring Harb Symp Quant Biol. 1985; 50:433-7. DOI: 10.1101/sqb.1985.050.01.054. View

W Berendzen K, Weiste C, Wanke D, Kilian J, Harter K, Droge-Laser W . Bioinformatic cis-element analyses performed in Arabidopsis and rice disclose bZIP- and MYB-related binding sites as potential AuxRE-coupling elements in auxin-mediated transcription. BMC Plant Biol. 2012; 12:125. PMC: 3438128. DOI: 10.1186/1471-2229-12-125. View

Yan W, Chen D, Schumacher J, Durantini D, Engelhorn J, Chen M . Dynamic control of enhancer activity drives stage-specific gene expression during flower morphogenesis. Nat Commun. 2019; 10(1):1705. PMC: 6461659. DOI: 10.1038/s41467-019-09513-2. View

10.

Shirsat A, Wilford N, Croy R, Boulter D . Sequences responsible for the tissue specific promoter activity of a pea legumin gene in tobacco. Mol Gen Genet. 1989; 215(2):326-31. DOI: 10.1007/BF00339737. View

11.

Du D, Zhang Q, Cheng T, Pan H, Yang W, Sun L . Genome-wide identification and analysis of late embryogenesis abundant (LEA) genes in Prunus mume. Mol Biol Rep. 2012; 40(2):1937-46. DOI: 10.1007/s11033-012-2250-3. View

12.

Mohanan M, Pushpanathan A, Thelakat Sasikumar S, Selvarajan D, Jayanarayanan A, R A . Ectopic expression of DJ-1/PfpI domain containing Erianthus arundinaceus Glyoxalase III (EaGly III) enhances drought tolerance in sugarcane. Plant Cell Rep. 2020; 39(11):1581-1594. DOI: 10.1007/s00299-020-02585-1. View

13.

Philip A, Syamaladevi D, Chakravarthi M, Gopinath K, Subramonian N . 5' Regulatory region of ubiquitin 2 gene from Porteresia coarctata makes efficient promoters for transgene expression in monocots and dicots. Plant Cell Rep. 2013; 32(8):1199-210. DOI: 10.1007/s00299-013-1416-3. View

14.

Zhang N, McHale L, Finer J . Isolation and characterization of "GmScream" promoters that regulate highly expressing soybean (Glycine max Merr.) genes. Plant Sci. 2015; 241:189-98. DOI: 10.1016/j.plantsci.2015.10.010. View

15.

Chakravarthi M, Philip A, Subramonian N . Truncated Ubiquitin 5' Regulatory Region from Erianthus arundinaceus Drives Enhanced Transgene Expression in Heterologous Systems. Mol Biotechnol. 2015; 57(9):820-35. DOI: 10.1007/s12033-015-9875-0. View

16.

Zhang F, Peterson T . Comparisons of maize pericarp color1 alleles reveal paralogous gene recombination and an organ-specific enhancer region. Plant Cell. 2005; 17(3):903-14. PMC: 1069707. DOI: 10.1105/tpc.104.029660. View

17.

Suhandono S, Apriyanto A, Ihsani N . Isolation and characterization of three cassava elongation factor 1 alpha (MeEF1A) promoters. PLoS One. 2014; 9(1):e84692. PMC: 3880305. DOI: 10.1371/journal.pone.0084692. View

18.

Agarwal P, Kumar R, Pareek A, Sharma A . Fruit preferential activity of the tomato RIP1 gene promoter in transgenic tomato and Arabidopsis. Mol Genet Genomics. 2016; 292(1):145-156. DOI: 10.1007/s00438-016-1262-4. View

19.

Singh S, Rajam M . Citrus biotechnology: Achievements, limitations and future directions. Physiol Mol Biol Plants. 2013; 15(1):3-22. PMC: 3550383. DOI: 10.1007/s12298-009-0001-2. View

20.

Gallo-Meagher M, Irvine J . Effects of tissue type and promoter strength on transient GUS expression in sugarcane following particle bombardment. Plant Cell Rep. 2013; 12(12):666-70. DOI: 10.1007/BF00233416. View